Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27i02
         (565 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81494-10|CAN86581.1| 1507|Caenorhabditis elegans Hypothetical p...    29   3.1  
Z81494-9|CAB04052.2| 1505|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U80837-7|AAB37907.1|  760|Caenorhabditis elegans Hypothetical pr...    27   9.3  
AL033510-10|CAA22063.2|  274|Caenorhabditis elegans Hypothetical...    27   9.3  
AL033510-2|CAA22065.1|  281|Caenorhabditis elegans Hypothetical ...    27   9.3  

>Z81494-10|CAN86581.1| 1507|Caenorhabditis elegans Hypothetical
            protein F02E9.4b protein.
          Length = 1507

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +1

Query: 73   HLIVRKHHMVQQHVAKVHGLEQLHFVNYF 159
            ++I+R HHM+Q+  AK+   + ++   +F
Sbjct: 1153 YMIIRYHHMIQERFAKILSTQAIYAQEHF 1181


>Z81494-9|CAB04052.2| 1505|Caenorhabditis elegans Hypothetical protein
            F02E9.4a protein.
          Length = 1505

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +1

Query: 73   HLIVRKHHMVQQHVAKVHGLEQLHFVNYF 159
            ++I+R HHM+Q+  AK+   + ++   +F
Sbjct: 1151 YMIIRYHHMIQERFAKILSTQAIYAQEHF 1179


>U80837-7|AAB37907.1|  760|Caenorhabditis elegans Hypothetical
           protein F07E5.8 protein.
          Length = 760

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = +1

Query: 403 HF*FLYWCTIQLI 441
           HF FLYW TIQLI
Sbjct: 85  HFYFLYWNTIQLI 97


>AL033510-10|CAA22063.2|  274|Caenorhabditis elegans Hypothetical
           protein Y40H7A.3 protein.
          Length = 274

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +3

Query: 411 ILILVHN-SIDYIQMLTKVYCSAF*FINRSR*TSCAINCMYIGRGSSCLS 557
           ILI +H      ++ML K+    F   N  R  SC I C Y      C+S
Sbjct: 213 ILIEIHGLPAKQLEMLRKISRLGFRMFNFERNPSCTICCEYSFINEMCMS 262


>AL033510-2|CAA22065.1|  281|Caenorhabditis elegans Hypothetical
           protein Y40H7A.2 protein.
          Length = 281

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +3

Query: 411 ILILVHN-SIDYIQMLTKVYCSAF*FINRSR*TSCAINCMYIGRGSSCLS 557
           ILI +H      ++ML K+    F   N  R  SC I C Y      C+S
Sbjct: 220 ILIEIHGLPAKQLEMLRKISRLGFRMFNFERNPSCTICCEYSFINEMCMS 269


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,252,710
Number of Sequences: 27780
Number of extensions: 309607
Number of successful extensions: 851
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)