Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27i02
         (565 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    23   1.6  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    23   1.6  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           22   4.9  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   8.6  

>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +3

Query: 459 KVYCSAF*FINRSR*TSCAINCMYIGR-GSSC 551
           +V C    F  +   ++CA NC+ +G+ G  C
Sbjct: 43  RVTCDLLSFKGQVNDSACAANCLSLGKAGGHC 74


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +3

Query: 459 KVYCSAF*FINRSR*TSCAINCMYIGR-GSSC 551
           +V C    F  +   ++CA NC+ +G+ G  C
Sbjct: 43  RVTCDLLSFKGQVNDSACAANCLSLGKAGGHC 74


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +3

Query: 459 KVYCSAF*FINRSR*TSCAINCMYIGR-GSSC 551
           +V C    F  +   ++CA NC  +G+ G  C
Sbjct: 18  RVTCDLLSFKGQVNDSACAANCHSLGKAGGHC 49


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 378 ILCNTWTNPFLILILVHNS 434
           +L NTW +P   +I VH +
Sbjct: 339 LLQNTWLDPEYPMIRVHKT 357


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,922
Number of Sequences: 438
Number of extensions: 3967
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)