Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27h18
(336 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80023-2|AAG24035.1| 204|Caenorhabditis elegans Hypothetical pr... 30 0.47
Z78415-9|CAI58633.1| 685|Caenorhabditis elegans Hypothetical pr... 29 0.63
Z78415-8|CAB01675.2| 765|Caenorhabditis elegans Hypothetical pr... 29 0.63
EF584656-1|ABQ57414.1| 500|Caenorhabditis elegans LAD-2 short i... 29 0.63
EF584655-1|ABQ57413.1| 1187|Caenorhabditis elegans LAD-2 long is... 29 0.63
AY912076-1|AAX81408.1| 685|Caenorhabditis elegans extracellular... 29 0.63
AF456361-1|AAL60232.1| 1187|Caenorhabditis elegans immunoglobuli... 29 0.63
AC024817-51|AAP68914.1| 496|Caenorhabditis elegans L1 cam adhes... 29 0.63
AC024817-49|AAF59572.3| 1187|Caenorhabditis elegans L1 cam adhes... 29 0.63
Z81116-13|CAB03300.1| 245|Caenorhabditis elegans Hypothetical p... 29 1.1
U41532-4|AAK68320.1| 767|Caenorhabditis elegans Hypothetical pr... 29 1.1
U41532-3|AAK68319.1| 797|Caenorhabditis elegans Hypothetical pr... 29 1.1
Z81533-4|CAB04338.1| 280|Caenorhabditis elegans Hypothetical pr... 27 2.5
U97592-4|AAB52872.1| 450|Caenorhabditis elegans Hypothetical pr... 27 3.3
U23139-1|AAK31493.2| 513|Caenorhabditis elegans Hypothetical pr... 27 3.3
Z81035-9|CAB02734.1| 628|Caenorhabditis elegans Hypothetical pr... 26 5.8
U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein. 26 5.8
U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein. 26 5.8
AL132862-25|CAB60566.2| 60|Caenorhabditis elegans Hypothetical... 26 5.8
AL032632-2|CAA21590.1| 161|Caenorhabditis elegans Hypothetical ... 26 5.8
AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell... 26 5.8
Z93375-2|CAB07564.2| 359|Caenorhabditis elegans Hypothetical pr... 26 7.7
Z49067-3|CAA88852.3| 591|Caenorhabditis elegans Hypothetical pr... 26 7.7
Z34799-8|CAA84319.3| 591|Caenorhabditis elegans Hypothetical pr... 26 7.7
U43375-10|AAA83627.1| 520|Caenorhabditis elegans Hypothetical p... 26 7.7
>U80023-2|AAG24035.1| 204|Caenorhabditis elegans Hypothetical
protein F07C4.6 protein.
Length = 204
Score = 29.9 bits (64), Expect = 0.47
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -2
Query: 161 TCGFPC-SSTYLSVNVSWPNLNCPILT*AILI 69
TCG C +STY N +P LNC +T A+ +
Sbjct: 104 TCGLCCQTSTYSCQNAPFPRLNCASVTKAMCL 135
>Z78415-9|CAI58633.1| 685|Caenorhabditis elegans Hypothetical
protein C17G1.6b protein.
Length = 685
Score = 29.5 bits (63), Expect = 0.63
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 208 CKDAVSRHVDKKYKYTYSESGARLPPSAPNSVAKQGDPLYL 330
C D +V+ KY + +GARL S P+ + +GD + +
Sbjct: 396 CADPCQSYVEVKYLSQKTSTGARLCCSLPSVIRSEGDDVII 436
>Z78415-8|CAB01675.2| 765|Caenorhabditis elegans Hypothetical
protein C17G1.6a protein.
Length = 765
Score = 29.5 bits (63), Expect = 0.63
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 208 CKDAVSRHVDKKYKYTYSESGARLPPSAPNSVAKQGDPLYL 330
C D +V+ KY + +GARL S P+ + +GD + +
Sbjct: 396 CADPCQSYVEVKYLSQKTSTGARLCCSLPSVIRSEGDDVII 436
>EF584656-1|ABQ57414.1| 500|Caenorhabditis elegans LAD-2 short
isoform protein.
Length = 500
Score = 29.5 bits (63), Expect = 0.63
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -1
Query: 234 HVSAYSVFTISIF*TAGDVLGHKLDLRVSLLEHVPQR 124
H Y F +IF TA L +K+ LR+ LEH P+R
Sbjct: 98 HQGYYQCFASNIFGTA---LSNKMHLRLGSLEHFPKR 131
>EF584655-1|ABQ57413.1| 1187|Caenorhabditis elegans LAD-2 long
isoform protein.
Length = 1187
Score = 29.5 bits (63), Expect = 0.63
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -1
Query: 234 HVSAYSVFTISIF*TAGDVLGHKLDLRVSLLEHVPQR 124
H Y F +IF TA L +K+ LR+ LEH P+R
Sbjct: 98 HQGYYQCFASNIFGTA---LSNKMHLRLGSLEHFPKR 131
>AY912076-1|AAX81408.1| 685|Caenorhabditis elegans extracellular
matrix metalloproteaseprotein.
Length = 685
Score = 29.5 bits (63), Expect = 0.63
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 208 CKDAVSRHVDKKYKYTYSESGARLPPSAPNSVAKQGDPLYL 330
C D +V+ KY + +GARL S P+ + +GD + +
Sbjct: 396 CADPCQSYVEVKYLSQKTSTGARLCCSLPSVIRSEGDDVII 436
>AF456361-1|AAL60232.1| 1187|Caenorhabditis elegans immunoglobulin
domain-containingprotein Y54G2A.25 protein.
Length = 1187
Score = 29.5 bits (63), Expect = 0.63
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -1
Query: 234 HVSAYSVFTISIF*TAGDVLGHKLDLRVSLLEHVPQR 124
H Y F +IF TA L +K+ LR+ LEH P+R
Sbjct: 98 HQGYYQCFASNIFGTA---LSNKMHLRLGSLEHFPKR 131
>AC024817-51|AAP68914.1| 496|Caenorhabditis elegans L1 cam adhesion
molecule homologprotein 2, isoform b protein.
Length = 496
Score = 29.5 bits (63), Expect = 0.63
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -1
Query: 234 HVSAYSVFTISIF*TAGDVLGHKLDLRVSLLEHVPQR 124
H Y F +IF TA L +K+ LR+ LEH P+R
Sbjct: 98 HQGYYQCFASNIFGTA---LSNKMHLRLGSLEHFPKR 131
>AC024817-49|AAF59572.3| 1187|Caenorhabditis elegans L1 cam adhesion
molecule homologprotein 2, isoform a protein.
Length = 1187
Score = 29.5 bits (63), Expect = 0.63
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -1
Query: 234 HVSAYSVFTISIF*TAGDVLGHKLDLRVSLLEHVPQR 124
H Y F +IF TA L +K+ LR+ LEH P+R
Sbjct: 98 HQGYYQCFASNIFGTA---LSNKMHLRLGSLEHFPKR 131
>Z81116-13|CAB03300.1| 245|Caenorhabditis elegans Hypothetical
protein T06C12.14 protein.
Length = 245
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -2
Query: 158 CGFPC-SSTYLSVNVSWPNLNCPILT 84
CG C +S+Y NV++P LNC +T
Sbjct: 105 CGLCCQTSSYSCPNVAFPRLNCATIT 130
>U41532-4|AAK68320.1| 767|Caenorhabditis elegans Hypothetical
protein F11D5.3b protein.
Length = 767
Score = 28.7 bits (61), Expect = 1.1
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 235 PRVCLQRLYNFHILNCW 185
PR+C +LYN IL CW
Sbjct: 722 PRMCPSKLYNEQILPCW 738
>U41532-3|AAK68319.1| 797|Caenorhabditis elegans Hypothetical
protein F11D5.3a protein.
Length = 797
Score = 28.7 bits (61), Expect = 1.1
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 235 PRVCLQRLYNFHILNCW 185
PR+C +LYN IL CW
Sbjct: 752 PRMCPSKLYNEQILPCW 768
>Z81533-4|CAB04338.1| 280|Caenorhabditis elegans Hypothetical
protein F36G9.7 protein.
Length = 280
Score = 27.5 bits (58), Expect = 2.5
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -2
Query: 206 FPYFKLLAMSLATNLTCGFPCSSTYLSVNVSW 111
FPY++ L TNLTC +S ++ VNVS+
Sbjct: 241 FPYYEYLCTHYWTNLTC---YTSIFVFVNVSF 269
>U97592-4|AAB52872.1| 450|Caenorhabditis elegans Hypothetical
protein C14A11.5 protein.
Length = 450
Score = 27.1 bits (57), Expect = 3.3
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +1
Query: 199 YGNCKDAVSRHVDKKYKYTY 258
YGNCK+++ V++KY +
Sbjct: 322 YGNCKESIRSRVEEKYNQLF 341
>U23139-1|AAK31493.2| 513|Caenorhabditis elegans Hypothetical
protein F13H8.5 protein.
Length = 513
Score = 27.1 bits (57), Expect = 3.3
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -3
Query: 307 LPRCLEPRAVVSPPTRCTYI 248
+PR +P AVVSPP + T++
Sbjct: 303 IPRTSQPAAVVSPPQQRTFV 322
>Z81035-9|CAB02734.1| 628|Caenorhabditis elegans Hypothetical
protein C15H11.3 protein.
Length = 628
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 163 KFVAKDIASSLKYGNCKDAVSRHVDKKY 246
+F AKD+ +L GN V H+D KY
Sbjct: 216 EFKAKDMMMNLTKGNVMLTVLDHIDDKY 243
>U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 26.2 bits (55), Expect = 5.8
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = +1
Query: 181 IASSLKYGNCKDAVSRHVDKKYKYTYSESGARLPPSA 291
++ +L+Y K+ + + + KK+ Y + + A PP+A
Sbjct: 119 LSRALRYYYEKNIIKKVIGKKFVYRFVTTDAHAPPTA 155
>U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 26.2 bits (55), Expect = 5.8
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = +1
Query: 181 IASSLKYGNCKDAVSRHVDKKYKYTYSESGARLPPSA 291
++ +L+Y K+ + + + KK+ Y + + A PP+A
Sbjct: 119 LSRALRYYYEKNIIKKVIGKKFVYRFVTTDAHAPPTA 155
>AL132862-25|CAB60566.2| 60|Caenorhabditis elegans Hypothetical
protein Y73F8A.32 protein.
Length = 60
Score = 26.2 bits (55), Expect = 5.8
Identities = 8/19 (42%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Frame = -3
Query: 280 VVSPPTRCTYIC-IFYPRV 227
++SPPT C + C +++P+V
Sbjct: 2 LLSPPTNCRFFCFLYFPKV 20
>AL032632-2|CAA21590.1| 161|Caenorhabditis elegans Hypothetical
protein Y11D7A.5 protein.
Length = 161
Score = 26.2 bits (55), Expect = 5.8
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 114 GHVYAEVRARARKPASQVCGQGHR 185
G + E+R + ++ ++CGQGHR
Sbjct: 82 GLIADELRVKNKEAIDKMCGQGHR 105
>AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell
lineage protein 1 protein.
Length = 441
Score = 26.2 bits (55), Expect = 5.8
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = +1
Query: 181 IASSLKYGNCKDAVSRHVDKKYKYTYSESGARLPPSA 291
++ +L+Y K+ + + + KK+ Y + + A PP+A
Sbjct: 119 LSRALRYYYEKNIIKKVIGKKFVYRFVTTDAHAPPTA 155
>Z93375-2|CAB07564.2| 359|Caenorhabditis elegans Hypothetical
protein C38C6.4 protein.
Length = 359
Score = 25.8 bits (54), Expect = 7.7
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 200 YFKLLAMSLATNLTCGFPCSST-YLSVNVSWPNLNCPILT*AILIY 66
+F LA+S+A G C L+++ SW NLN + +L+Y
Sbjct: 233 FFNRLALSIAFFQISGPMCLLIDNLNISRSWKNLNTVVFDTILLLY 278
>Z49067-3|CAA88852.3| 591|Caenorhabditis elegans Hypothetical
protein C44F1.1 protein.
Length = 591
Score = 25.8 bits (54), Expect = 7.7
Identities = 10/42 (23%), Positives = 20/42 (47%)
Frame = +1
Query: 121 FTLRYVLEQGNPQVKFVAKDIASSLKYGNCKDAVSRHVDKKY 246
F++ Y +E G P++ ++ + K G + + H KY
Sbjct: 386 FSICYGIENGKPKIGSISAEQVKDFKQGLPEMLIDEHYPSKY 427
>Z34799-8|CAA84319.3| 591|Caenorhabditis elegans Hypothetical
protein C44F1.1 protein.
Length = 591
Score = 25.8 bits (54), Expect = 7.7
Identities = 10/42 (23%), Positives = 20/42 (47%)
Frame = +1
Query: 121 FTLRYVLEQGNPQVKFVAKDIASSLKYGNCKDAVSRHVDKKY 246
F++ Y +E G P++ ++ + K G + + H KY
Sbjct: 386 FSICYGIENGKPKIGSISAEQVKDFKQGLPEMLIDEHYPSKY 427
>U43375-10|AAA83627.1| 520|Caenorhabditis elegans Hypothetical
protein K09C4.1a protein.
Length = 520
Score = 25.8 bits (54), Expect = 7.7
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -1
Query: 261 AVRIFVFFIHVSAYSVFTISIF*TAGDVLGHKLDLRVSL 145
AV +F+ F +A SV+TI TAG + L++ + L
Sbjct: 273 AVTVFLQFDTTTAQSVYTIDFHKTAGFTVQEALNINLIL 311
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,645,809
Number of Sequences: 27780
Number of extensions: 148610
Number of successful extensions: 433
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -