Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27h13
         (426 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69385-1|CAA93424.2|  515|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z22181-4|CAA80182.1|  824|Caenorhabditis elegans Hypothetical pr...    27   5.6  
U64844-10|AAB18310.1|  448|Caenorhabditis elegans Hypothetical p...    27   7.4  
Z81579-9|CAN99688.1|  225|Caenorhabditis elegans Hypothetical pr...    26   9.8  
U46674-5|AAA85757.1|  708|Caenorhabditis elegans Hypothetical pr...    26   9.8  

>Z69385-1|CAA93424.2|  515|Caenorhabditis elegans Hypothetical
           protein ZK593.1 protein.
          Length = 515

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -3

Query: 337 MSTVCGCKYSGSPCFATLSGAWCWIWSACSNVDLY--LPSTWTRIARSQFTY 188
           +S +CG + S  P     +G  C I  ACS+V+    + +T   IAR  F++
Sbjct: 18  ISHLCGLRISERPQKTRKTGVICTIGPACSDVETLRKMINTGMNIARLNFSH 69


>Z22181-4|CAA80182.1|  824|Caenorhabditis elegans Hypothetical
           protein ZK632.5 protein.
          Length = 824

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +3

Query: 153 RFVAKDIASSLKYVNCERAIRVHVDGKYKSTFEHADQIQHHAP 281
           R   +D  +SLK V+  + + V +DG+YK        ++++ P
Sbjct: 93  RLSDEDFENSLKEVSLSQKLMVRIDGEYKYRLYSKPIVRNNIP 135


>U64844-10|AAB18310.1|  448|Caenorhabditis elegans Hypothetical
           protein T22F3.7 protein.
          Length = 448

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 96  KFG--EDTFTLRYVLGDEQPVRFVAKDIASSLKYVN 197
           KFG  E  F    +LG   PVRFV   I+  LK+V+
Sbjct: 309 KFGVTETGFYASLILGISLPVRFVFALISDKLKFVS 344


>Z81579-9|CAN99688.1|  225|Caenorhabditis elegans Hypothetical
           protein R13H4.2a protein.
          Length = 225

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -3

Query: 268 WIWSACSNVDLYLPSTWTRIARSQF 194
           W    CS  D YLPST+ R  R  F
Sbjct: 197 WRELYCSTKDNYLPSTYDRKTRQYF 221


>U46674-5|AAA85757.1|  708|Caenorhabditis elegans Hypothetical
           protein T26A8.1 protein.
          Length = 708

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
 Frame = -3

Query: 370 FIIS*ITPDLVMSTVCGCKYSGSPCFATLSGAWCWIW-----SACSNVDLYLPSTWTRIA 206
           F+I+ +       +VC  ++    C  T  G +C  W     SA SN+ L+L S    + 
Sbjct: 93  FLIAGLVSSSTTLSVCSVRHEVIACLWTCIGMFCGAWSTKLTSARSNLMLFLLSALLTLL 152

Query: 205 RSQFTYF 185
            + F  F
Sbjct: 153 VNLFLAF 159


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,172,606
Number of Sequences: 27780
Number of extensions: 212290
Number of successful extensions: 555
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)