Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27h12
         (316 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    27   0.67 
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   0.67 
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    23   8.3  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    23   8.3  

>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 27.1 bits (57), Expect = 0.67
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 223  GLCPNRWRDRCTQKSKLQESF 161
            G+  +RW D+  QK  LQESF
Sbjct: 1216 GMYKDRWTDKPVQKDILQESF 1236


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 27.1 bits (57), Expect = 0.67
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 267  SKTQCNGIYSLLMTAVFVLIDGATGV 190
            SKT    ++SLL  AV+++++  TGV
Sbjct: 1431 SKTYQKDLFSLLWYAVYIMVETTTGV 1456


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 251 LHCVLDQLLVIY 286
           LHCVLD  L+I+
Sbjct: 168 LHCVLDHYLIIF 179


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 93   EFSWSSTISRKCYQELKI 40
            +F+ SST+S+K   ELKI
Sbjct: 1168 QFTTSSTMSKKSLSELKI 1185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,090,862
Number of Sequences: 5004
Number of extensions: 16782
Number of successful extensions: 34
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)