Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27h12
         (316 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0468 + 3629974-3631051,3631102-3632649,3632766-3633133           27   3.1  
05_07_0355 + 29522514-29522537,29522902-29522964,29523632-295236...    25   9.4  

>11_01_0468 + 3629974-3631051,3631102-3632649,3632766-3633133
          Length = 997

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 250 ITLCFGSITCHLPQYASTPSN 312
           + LC G++  HLP+   TPSN
Sbjct: 600 LALCGGALELHLPECPITPSN 620


>05_07_0355 +
           29522514-29522537,29522902-29522964,29523632-29523682,
           29523757-29523883,29524353-29524429,29524715-29524757,
           29525150-29525166,29525218-29525280
          Length = 154

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 229 HEK*IDTITLCFGSITCH 282
           H   +D +T+CF  + CH
Sbjct: 69  HNGSVDFVTMCFNEVICH 86


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,619,420
Number of Sequences: 37544
Number of extensions: 95043
Number of successful extensions: 159
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)