Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27h08
         (317 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   0.67 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   0.67 
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    20   6.3  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    20   6.3  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    20   6.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    20   6.3  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 0.67
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 237 YCGSANYQRQHLRQHSVAEQR 175
           Y  +ANY   +L +H+V EQR
Sbjct: 198 YLLAANYTGWYLTKHNVPEQR 218


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 0.67
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 237 YCGSANYQRQHLRQHSVAEQR 175
           Y  +ANY   +L +H+V EQR
Sbjct: 198 YLLAANYTGWYLTKHNVPEQR 218


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 7/32 (21%), Positives = 16/32 (50%)
 Frame = +3

Query: 174 ISVQQHCVVVNAVFDNLRFRSIDAFKKLMCIN 269
           +   + C+++  +FDN+     + FK +   N
Sbjct: 39  LQANRACILIKDLFDNVHNHIQNIFKIIKSTN 70


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 7/32 (21%), Positives = 16/32 (50%)
 Frame = +3

Query: 174 ISVQQHCVVVNAVFDNLRFRSIDAFKKLMCIN 269
           +   + C+++  +FDN+     + FK +   N
Sbjct: 22  LQANRACILIKDLFDNVHNHIQNIFKIIKSTN 53


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 196 LS*MLSLIICASAVST 243
           LS MLSL++   A+ST
Sbjct: 58  LSAMLSLVVVTVAIST 73


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 230 EAQIIKDSIYDNTVL 186
           ++ + KD+ YDN VL
Sbjct: 320 DSGVAKDAAYDNIVL 334


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,016
Number of Sequences: 438
Number of extensions: 1476
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6844365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)