Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27h07
         (344 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces pom...    25   3.3  
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo...    25   4.4  
SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1 type|Schizosaccharom...    25   4.4  
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    25   4.4  

>SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 403

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +3

Query: 9  KTVLCCAYVVRR 44
          KT LCC+YV+R+
Sbjct: 63 KTKLCCSYVIRK 74


>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
           Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 457

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 284 QKLAAQHRMQCEGCRQCMHA 343
           +KL  Q++ +CE C+Q + A
Sbjct: 297 EKLTKQNKYRCENCKQLVDA 316


>SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +1

Query: 187 GTAARCSRCGATTDV*LTLRAFATKRWKSLRPTETCRSTQNAM*RLSTV 333
           G   R S CGA  D+   LR   +   K   PTE      +A+  + T+
Sbjct: 306 GKILRASWCGARYDIQGVLREACSNLLKKRVPTELRLKRAHALLEIGTI 354


>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +3

Query: 237 DFAGIRNKTLEIIKTDRNLPLNTEC-NVKA 323
           DFA +       ++  + +P+N EC N+KA
Sbjct: 323 DFANLYRPYFNFLRQKKLIPINCECLNIKA 352


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,352,433
Number of Sequences: 5004
Number of extensions: 22762
Number of successful extensions: 63
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)