Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27h07
(344 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0147 - 5923117-5923215,5923882-5924069,5924885-5924977,592... 32 0.14
12_01_0546 + 4329200-4329472 29 1.3
03_05_0813 - 27894593-27894915,27896164-27896422,27896513-278967... 29 1.3
02_05_0555 - 29937973-29938395,29938509-29938790 28 1.7
03_05_0684 - 26720262-26720464,26721118-26721181,26721269-267215... 27 3.0
10_07_0160 - 13656172-13656476,13656799-13657528 27 3.9
03_06_0299 + 32956737-32957129,32957250-32957442,32957537-32958117 27 3.9
09_02_0109 - 4372621-4373024,4373498-4373760,4373988-4374157 27 5.2
07_01_0583 + 4338003-4338377,4338455-4338647,4338734-4339326 27 5.2
06_02_0248 + 13468100-13468336,13468426-13468569,13469044-134698... 27 5.2
05_04_0429 - 21169378-21169716 27 5.2
07_03_0616 + 19988392-19988734,19988755-19988891,19989021-199892... 26 6.9
01_05_0567 - 23334967-23335006,23335225-23335394 26 6.9
02_01_0162 - 1126273-1126593,1126950-1127117,1127211-1127501,112... 26 9.1
>03_02_0147 -
5923117-5923215,5923882-5924069,5924885-5924977,
5925499-5925628,5925720-5925802,5925893-5925976,
5926253-5926316,5926375-5926515,5926801-5926863,
5926968-5927006,5927126-5927185,5927567-5927624,
5927708-5928099
Length = 497
Score = 31.9 bits (69), Expect = 0.14
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -2
Query: 181 TVESYSGGSERAKTRSACVLTRPSCMLLSAAVGVNWNR 68
TVE ++G S A +R+A + PS L S G W R
Sbjct: 101 TVEEWAGSSAAALSRTAVLTASPSSSLASRRFGSRWGR 138
>12_01_0546 + 4329200-4329472
Length = 90
Score = 28.7 bits (61), Expect = 1.3
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +3
Query: 81 TPTAA--LNNMHDGRVKTQALRVLARSLPPLYDSTVDRHGCKVFTVRRYNRRVIDFAGIR 254
TPT +N H+ R ++ + R PL + D HG TVRR + D AG R
Sbjct: 8 TPTMGQRINTQHN-RHRSHNIEAYIRQDTPLDINFRDTHGVSSDTVRRDESAISDLAGHR 66
Query: 255 NK 260
K
Sbjct: 67 FK 68
>03_05_0813 -
27894593-27894915,27896164-27896422,27896513-27896728,
27896920-27897625,27897895-27898100
Length = 569
Score = 28.7 bits (61), Expect = 1.3
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +1
Query: 13 RYCAVRTLFVETKNYQRNFD---SNLPQPPRSTTCTTVALRRKRFEFWLARYLRC 168
R C+ + +R+F+ P+P R +AL +RF+FWL L C
Sbjct: 308 RLCSDDVTLISLLFRKRHFELRHQQQPEPKRLCNDAYIALCHRRFKFWLHHDLVC 362
>02_05_0555 - 29937973-29938395,29938509-29938790
Length = 234
Score = 28.3 bits (60), Expect = 1.7
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = +1
Query: 82 PQPPRSTTCTTVALR---RKRFEFWLARYLRCTTRPS 183
PQP RST VA R R+ ++FWL C PS
Sbjct: 11 PQPKRSTAAAAVARRRIGRELWQFWLDPPPYCRPGPS 47
>03_05_0684 -
26720262-26720464,26721118-26721181,26721269-26721507,
26722486-26722575,26723678-26723761,26724278-26724434
Length = 278
Score = 27.5 bits (58), Expect = 3.0
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -1
Query: 317 HIAFCVERQVSVGLNDFQRFVANARKVNYTSVVAPH 210
H AFCV+R + + LN +K + V APH
Sbjct: 80 HCAFCVKRVLRMVLNKVLELFCVKKKDSKKKVAAPH 115
>10_07_0160 - 13656172-13656476,13656799-13657528
Length = 344
Score = 27.1 bits (57), Expect = 3.9
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +3
Query: 135 LRVLARSLP-PLYDSTVDRHGCKVFTVRRYNRRV 233
L + A SLP PL+ S+VD TVR +NR++
Sbjct: 12 LLITALSLPFPLHASSVDPLSAGATTVRYWNRKI 45
>03_06_0299 + 32956737-32957129,32957250-32957442,32957537-32958117
Length = 388
Score = 27.1 bits (57), Expect = 3.9
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 126 TQALRVLARSLPPLYDSTVDRHGCKVFTVRRYNRRVIDFAGI 251
T+A R ++LPPL+ T DR G V V R+ + G+
Sbjct: 227 TKAYRAALQALPPLFVGTPDRLGQIVAVVAEAARQSLKKKGL 268
>09_02_0109 - 4372621-4373024,4373498-4373760,4373988-4374157
Length = 278
Score = 26.6 bits (56), Expect = 5.2
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -1
Query: 266 QRFVANARKVNYTS-VVAPHREHLAAVPIDGRVVQRR*RASQNSKRLRLNATV 111
QR RK + S +AP HL A P G ++RR R Q +R R V
Sbjct: 70 QRVKKLRRKPSRPSPALAPAARHLLASPGHGGRLERRRRCMQTERRARRRTDV 122
>07_01_0583 + 4338003-4338377,4338455-4338647,4338734-4339326
Length = 386
Score = 26.6 bits (56), Expect = 5.2
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 126 TQALRVLARSLPPLYDSTVDRHGCKVFTVRRYNRRVIDFAGI 251
T+A R ++LPPL+ T DR G V V R+ + G+
Sbjct: 221 TKAYRAALQALPPLFVGTPDRLGQIVAVVAEAARQSLRKKGL 262
>06_02_0248 +
13468100-13468336,13468426-13468569,13469044-13469808,
13470272-13470564,13470642-13470833,13471151-13471229,
13471339-13471431,13471519-13471704
Length = 662
Score = 26.6 bits (56), Expect = 5.2
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -3
Query: 189 ADRRSSRTAEVASEPKLEALA 127
A RRS R A+ A+EP+ EA A
Sbjct: 82 APRRSKRKAQAATEPEAEATA 102
>05_04_0429 - 21169378-21169716
Length = 112
Score = 26.6 bits (56), Expect = 5.2
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Frame = +1
Query: 193 AARCSRCGATTDV*LT---LRAF--ATKRWKSLRPTETCR 297
A RC RCG D+ T L+ F KRW P CR
Sbjct: 21 ARRCLRCGGAADLVETEKVLKLFFVPVKRWPGKDPAYLCR 60
>07_03_0616 +
19988392-19988734,19988755-19988891,19989021-19989231,
19989372-19989455,19989540-19989727,19989873-19990193
Length = 427
Score = 26.2 bits (55), Expect = 6.9
Identities = 22/80 (27%), Positives = 34/80 (42%)
Frame = +3
Query: 78 FTPTAALNNMHDGRVKTQALRVLARSLPPLYDSTVDRHGCKVFTVRRYNRRVIDFAGIRN 257
FT T ALN + G Q + L P V ++ ++ + + RR ID +
Sbjct: 103 FTQTKALNALVGGEELKQVRSAVQGYLRP---EMVTKY---IWKMDKEVRRHIDLHWVGQ 156
Query: 258 KTLEIIKTDRNLPLNTECNV 317
KTL + + L N C+V
Sbjct: 157 KTLTVAPLAKRLTFNITCSV 176
>01_05_0567 - 23334967-23335006,23335225-23335394
Length = 69
Score = 26.2 bits (55), Expect = 6.9
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Frame = +1
Query: 88 PPRSTTCTTVALRRKRFEFWLA--RYLRCTTRPSIGTAARCSR 210
P TTC + L R LA R RC + A RCSR
Sbjct: 20 PTCPTTCCMLRLPRATVTHRLAQQRSSRCVRTSDVAAACRCSR 62
>02_01_0162 -
1126273-1126593,1126950-1127117,1127211-1127501,
1127688-1127763,1127841-1127886,1128006-1128072,
1128162-1128234,1128321-1128561,1128669-1128822,
1128915-1129042,1129481-1129535,1129629-1129838
Length = 609
Score = 25.8 bits (54), Expect = 9.1
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 43 ETKNYQRNFDSNLPQPPRSTTCTTVALRRK 132
+ K Y +FD LP P + C T R+K
Sbjct: 417 DEKFYALHFDVRLPVQPSCSVCDTTIARQK 446
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,399,713
Number of Sequences: 37544
Number of extensions: 168565
Number of successful extensions: 529
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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