Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27h07
         (344 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-2064|AAF55213.2|  636|Drosophila melanogaster CG33207-P...    29   2.1  
AB081475-1|BAC06341.1|  636|Drosophila melanogaster transmembran...    29   2.1  
AE013599-2405|AAM68492.2|  396|Drosophila melanogaster CG30459-P...    28   3.7  

>AE014297-2064|AAF55213.2|  636|Drosophila melanogaster CG33207-PB,
           isoform B protein.
          Length = 636

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -2

Query: 127 VLTRPSCMLLSAAVGVNWNRNS 62
           VLT+P    LS+A+  +WNRNS
Sbjct: 565 VLTQPKPSKLSSALNFSWNRNS 586


>AB081475-1|BAC06341.1|  636|Drosophila melanogaster transmembrane
           protein Pxb protein.
          Length = 636

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -2

Query: 127 VLTRPSCMLLSAAVGVNWNRNS 62
           VLT+P    LS+A+  +WNRNS
Sbjct: 565 VLTQPKPSKLSSALNFSWNRNS 586


>AE013599-2405|AAM68492.2|  396|Drosophila melanogaster CG30459-PA
           protein.
          Length = 396

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +1

Query: 61  RNFDSNLPQP--PRSTTCTTVALRRKRFEFWLARYLRCTTRPSIGTAARCSRCG 216
           RN DS + +P  P+   C     ++++ E W     +C   PS  + A+C RCG
Sbjct: 319 RNRDSFIYEPRLPKKPPCECAKCKQRQAENWKDNKRKCPRIPS--SEAKC-RCG 369


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,523,550
Number of Sequences: 53049
Number of extensions: 288178
Number of successful extensions: 762
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 24,988,368
effective HSP length: 75
effective length of database: 21,009,693
effective search space used: 819378027
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)