Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27h07
         (344 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81129-4|CAB03405.1|  330|Caenorhabditis elegans Hypothetical pr...    28   1.6  
U23529-4|AAK39164.2|  545|Caenorhabditis elegans Hypothetical pr...    27   2.7  
Z75710-9|CAB00024.2|  752|Caenorhabditis elegans Hypothetical pr...    27   4.8  
AF003146-3|AAB54203.2|  252|Caenorhabditis elegans Abc transport...    26   6.3  
Z75711-3|CAB00035.3| 1204|Caenorhabditis elegans Hypothetical pr...    26   8.3  
U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical p...    26   8.3  
AF038615-5|AAB94142.1|  934|Caenorhabditis elegans Hypothetical ...    26   8.3  

>Z81129-4|CAB03405.1|  330|Caenorhabditis elegans Hypothetical
           protein T23F1.6 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -3

Query: 255 CECPQSQLHVCCSAAP*TPCSRA 187
           C C Q+     CS  P TPCS A
Sbjct: 38  CSCQQASQQYSCSCQPSTPCSCA 60


>U23529-4|AAK39164.2|  545|Caenorhabditis elegans Hypothetical
           protein C15B12.4 protein.
          Length = 545

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 52  NYQRNFDSNLPQPPRSTTCTTVALRRKRFEFWLARYLR 165
           NYQR F S       S++ +T+  R+KRF   L+R L+
Sbjct: 506 NYQRVFSSGAGSSSVSSSSSTIFKRKKRFSV-LSRILK 542


>Z75710-9|CAB00024.2|  752|Caenorhabditis elegans Hypothetical
           protein D1081.3 protein.
          Length = 752

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 15/77 (19%)
 Frame = +3

Query: 75  QFTPTAALNNMHDGRV---KTQALRVLARSLPPLYDSTVDRHGCK------------VFT 209
           QF P    N   DG +   K QA++     L  LYD  V   G K             F 
Sbjct: 525 QFKPLKIKNLHDDGWICTDKYQAMQDRGGPLVKLYDDKVTAIGIKSTTGYNSNQYEYYFD 584

Query: 210 VRRYNRRVIDFAGIRNK 260
           +R+YN  + +F+G+  K
Sbjct: 585 LRKYNNEICEFSGVCTK 601


>AF003146-3|AAB54203.2|  252|Caenorhabditis elegans Abc transporter
           family protein 6 protein.
          Length = 252

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 190 CRSTVESYSGGSERAKTRSACVLTRPSCMLL 98
           CR T+    GG +R  +    +++R SC++L
Sbjct: 72  CRQTLRVNDGGQKRKISVGIALMSRASCIIL 102


>Z75711-3|CAB00035.3| 1204|Caenorhabditis elegans Hypothetical
           protein K02B12.5 protein.
          Length = 1204

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 26/85 (30%), Positives = 41/85 (48%)
 Frame = +1

Query: 46  TKNYQRNFDSNLPQPPRSTTCTTVALRRKRFEFWLARYLRCTTRPSIGTAARCSRCGATT 225
           +K  QR+ + N+ +PP ST  TT    RKR             +PS+ T+ R  R  +++
Sbjct: 729 SKRKQRS-EENI-KPPNSTPPTTAHSNRKRL-----------VQPSLITSKRVQRQNSSS 775

Query: 226 DV*LTLRAFATKRWKSLRPTETCRS 300
            +    R   + R +S+ PT T RS
Sbjct: 776 SLTSNPRNSISPR-RSISPTTTVRS 799


>U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical
            protein C56C10.12 protein.
          Length = 1599

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 124  RRKRFEFWLARYLRCTTRPSIGTAA 198
            R KRFEFW   Y     + ++ TA+
Sbjct: 1446 RTKRFEFWNELYASIVDKAAVATAS 1470


>AF038615-5|AAB94142.1|  934|Caenorhabditis elegans Hypothetical
           protein R02D3.1 protein.
          Length = 934

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +3

Query: 93  ALNNMHDGRVKTQALRVLARSLPPLYDSTVDRHGCKVFTVRRYNRRVIDF 242
           +L ++ + +V  + L  L  +L    D  VDRHG  + T+ +Y  +++ F
Sbjct: 789 SLRHIIEEKVGGKGLSAL-ENLGLFSDKVVDRHGTPIDTLAQYLAKILAF 837


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,882,456
Number of Sequences: 27780
Number of extensions: 144931
Number of successful extensions: 388
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)