Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27h05
         (391 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    25   4.1  
SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73 family...    24   7.2  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    24   7.2  
SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subuni...    24   7.2  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    24   9.5  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    24   9.5  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    24   9.5  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    24   9.5  

>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +2

Query: 221 LPDGGLPI*PXNRITASRTK---WRSSTTAKKVYPSHDITNIVEASHYVKVS 367
           LP G LPI P   ++ + TK   W +S +A+       +   + A++ + VS
Sbjct: 187 LPTGSLPITPLKILSTNWTKLDSWLNSISARYAEAQKRVQQCIGAANSIIVS 238


>SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 371

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 46  RRLQERNAAAKMTRAVLFISVFTVLLDVLHAGQATNGA 159
           R +   N+     + + FIS+   +LD +HA +AT  A
Sbjct: 153 RTVSNHNSVLHGIKPIDFISLRKDVLDYIHANKATASA 190


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 111 YRTVGRPPRRAGDKWR 158
           YR +  P  R GDKW+
Sbjct: 427 YRVLNSPHPRTGDKWK 442


>SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subunit
           Rpa12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 119

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +2

Query: 254 NRITASRTKWRSSTTAKKVYPSHDITNIV 340
           N + ++  +W +    + VYPS    N+V
Sbjct: 15  NLLESTTAQWTTCDQCQSVYPSEQFANLV 43


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 13/51 (25%), Positives = 20/51 (39%)
 Frame = +1

Query: 181 CEAGSTYHPQYMSAAGRWTPDLTTKPHNCLKDKMEILDYCKKGIPES*HYE 333
           C+ G  +  Q +       P  ++  H C   +M I DY      +S H E
Sbjct: 50  CDKGLEHSDQMLVQTSDGRPVCSSCAHTCTACRMRIKDYALMSGYDSYHRE 100


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 287 SSTTAKKVYPSHDITNIVEAS 349
           SST+AK+  P H+ T+ ++AS
Sbjct: 271 SSTSAKRRRPDHNHTSTLDAS 291


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 283 EILDYCKKGIPES 321
           EI D+C+KG+ ES
Sbjct: 433 EITDFCQKGVEES 445


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 1   EYAGFWRPKRTSVVARRLQERNAAAKMTRAVLFISVFTVLLDVL 132
           E  G  R K  S + R LQ+RN   +     L +SV +   DV+
Sbjct: 347 EVNGMNRLKARSKIVRLLQQRNRLVEQVPHSLILSVCSRTGDVI 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,632,636
Number of Sequences: 5004
Number of extensions: 30103
Number of successful extensions: 79
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)