Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27h05
         (391 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0263 + 11234850-11235044,11235413-11237341                       30   0.57 
11_06_0011 + 19245742-19246440,19248361-19249170                       28   2.3  
05_05_0248 + 23598461-23598652,23599600-23599744,23599816-235999...    28   2.3  
05_01_0275 - 2136047-2136202,2137072-2137263,2137345-2137506           28   2.3  
12_02_1118 + 26210322-26212559                                         27   5.3  
10_08_0267 - 16333239-16333820,16333904-16334842,16334920-163351...    27   5.3  
12_01_0119 + 905916-907277,907737-907774,908269-908492,909411-90...    27   7.0  
11_03_0072 + 9605273-9606814,9616982-9617016,9617271-9617348,961...    27   7.0  
11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-85...    27   7.0  
06_01_0983 - 7630651-7630683,7630717-7630942,7630993-7631234,763...    27   7.0  
03_06_0214 + 32411341-32411347,32412642-32412878,32412955-324132...    27   7.0  
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921...    27   7.0  

>05_03_0263 + 11234850-11235044,11235413-11237341
          Length = 707

 Score = 30.3 bits (65), Expect = 0.57
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 373 PVAHFHVMRCFHDVRNVMTRVYLFCSSRGS 284
           P     +M CFH  RN+ T + L  SSRG+
Sbjct: 363 PDDELRMMVCFHSTRNIPTMINLMESSRGT 392


>11_06_0011 + 19245742-19246440,19248361-19249170
          Length = 502

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +1

Query: 121 LDVLHAGQATNGADPQVAVLCEAGSTYH--PQYMSAAGRWTPDLTTKPHNCLKD 276
           +D+  AG A +G + +  V+ E   T H  P   + A RW P    +   C+KD
Sbjct: 1   MDITVAGGAGDGGERRTWVV-EVERTLHDAPDAAAEASRWRPHCIYRVPACIKD 53


>05_05_0248 +
           23598461-23598652,23599600-23599744,23599816-23599966,
           23600049-23600174,23600253-23600333,23600706-23600898,
           23600990-23601260,23601807-23602000,23602086-23602105,
           23602352-23602394
          Length = 471

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 232 WTPDLTTKPHNCLKDKMEILDYCKKGIPES*HYEHRGSISL 354
           W PD  T       D+  I+ YCK    +S   E+ GSI++
Sbjct: 352 WHPDCNTNNIYITSDQDLIISYCKADSNDSSSEENAGSINI 392


>05_01_0275 - 2136047-2136202,2137072-2137263,2137345-2137506
          Length = 169

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 165 RISAICRLPGVEDVQQYGKNTYKKH 91
           R++ +C LP  ED++ Y +   KKH
Sbjct: 142 RVTLLCNLPTPEDLKHYEQGFIKKH 166


>12_02_1118 + 26210322-26212559
          Length = 745

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 355 VMRCFHDVRNVMTRVYLFCSSRGS 284
           V+ CFH  RN+ T + L  SSRG+
Sbjct: 394 VLACFHTNRNIPTLLNLVESSRGT 417


>10_08_0267 -
           16333239-16333820,16333904-16334842,16334920-16335172,
           16336837-16337063,16338189-16339388
          Length = 1066

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 19  RPKRTSVVARRLQERNAAAKMTRAV 93
           RP+R   + RRLQE +A+A +  AV
Sbjct: 741 RPRRVVQLPRRLQEPSASANLAHAV 765


>12_01_0119 +
           905916-907277,907737-907774,908269-908492,909411-909637,
           909733-909980,910275-910557,910707-911135
          Length = 936

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +1

Query: 202 HPQYMSAAGRWTPDLTTKPHNCLKDKMEIL 291
           HP  +   GRWTP    KP N LK   + L
Sbjct: 559 HPDMVKDIGRWTPSELGKP-NYLKKSRKAL 587


>11_03_0072 +
           9605273-9606814,9616982-9617016,9617271-9617348,
           9617427-9617501,9617583-9617657,9617731-9617977,
           9618070-9618313,9618852-9619309,9619388-9619675,
           9619751-9619788,9619882-9620452
          Length = 1216

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 14/44 (31%), Positives = 18/44 (40%)
 Frame = +1

Query: 133 HAGQATNGADPQVAVLCEAGSTYHPQYMSAAGRWTPDLTTKPHN 264
           H G+ TN  +P V + C A        +  AG WT       HN
Sbjct: 683 HQGKNTNTKEPSVRIGCPA--MIKINRLKGAGSWTVTKVVAAHN 724


>11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-852260,
            852330-852409,852506-852848,853068-853166,853240-853360,
            853567-853723,853976-854099,855275-855368,855866-857259,
            857882-857924,858240-858458,859379-859605,859701-859948,
            860246-860552,860725-861153
          Length = 1486

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +1

Query: 202  HPQYMSAAGRWTPDLTTKPHNCLKDKMEIL 291
            HP  +   GRWTP    KP N LK   + L
Sbjct: 1101 HPDMVKDIGRWTPSELGKP-NYLKKSRKAL 1129


>06_01_0983 -
           7630651-7630683,7630717-7630942,7630993-7631234,
           7631502-7631591,7631680-7631845,7632225-7633191,
           7633402-7633591,7633908-7634048,7634416-7634736
          Length = 791

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = -1

Query: 268 GSYAVXWSDRESTVRQLTCTAGGTCFLPRIAL---LLEDQRHLSPARRGG 128
           G Y +  SD  ++V+ +      TC L  I L   + ++ + + PAR GG
Sbjct: 547 GEYYIYLSDLANSVKPMGSLDNNTCELALIVLSADIKDNSKRIFPARIGG 596


>03_06_0214 +
           32411341-32411347,32412642-32412878,32412955-32413226,
           32413757-32413849,32413928-32414131
          Length = 270

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -2

Query: 93  HGARHFCGRVAFL 55
           HG  +FCGRVAFL
Sbjct: 174 HGVVNFCGRVAFL 186


>02_02_0346 -
           9214365-9214583,9214830-9214919,9215012-9215177,
           9215601-9215911,9215944-9216566,9216779-9216968,
           9217096-9217197,9217285-9217425,9217815-9218411,
           9219126-9219286,9220709-9220824,9221538-9221654,
           9221746-9221808,9221879-9221949
          Length = 988

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = -1

Query: 268 GSYAVXWSDRESTVRQLTCTAGGTCFLPRIAL---LLEDQRHLSPARRGG 128
           G Y +  SD  ++V+ +      TC L  I L   + ++ + + PAR GG
Sbjct: 838 GEYYIYLSDLANSVKPMGSLDNNTCELALIVLSTDIKDNSKRIFPARIGG 887


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,788,046
Number of Sequences: 37544
Number of extensions: 244895
Number of successful extensions: 620
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)