Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27h05
         (391 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U56966-10|AAA98722.1|  686|Caenorhabditis elegans Amyloid precur...    41   3e-04
U56966-9|AAK68242.1|  684|Caenorhabditis elegans Amyloid precurs...    41   3e-04
U00240-1|AAC46470.1|  680|Caenorhabditis elegans beta-amyloid pr...    41   3e-04
AC087794-7|AAG53706.1|  142|Caenorhabditis elegans Hypothetical ...    29   1.5  
AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical ...    28   2.0  

>U56966-10|AAA98722.1|  686|Caenorhabditis elegans Amyloid
           precursor-like protein1, isoform a protein.
          Length = 686

 Score = 41.1 bits (92), Expect = 3e-04
 Identities = 16/26 (61%), Positives = 20/26 (76%)
 Frame = +2

Query: 302 KKVYPSHDITNIVEASHYVKVSXWCK 379
           +K YPS +ITNIVE SH V +S WC+
Sbjct: 77  RKAYPSMNITNIVEYSHEVSISDWCR 102



 Score = 36.3 bits (80), Expect = 0.008
 Identities = 19/51 (37%), Positives = 24/51 (47%)
 Frame = +1

Query: 163 PQVAVLCEAGSTYHPQYMSAAGRWTPDLTTKPHNCLKDKMEILDYCKKGIP 315
           P VA  C     Y  QYM+  G W  D   +   C   K++IL YC+K  P
Sbjct: 36  PMVAFSCG----YRNQYMTEEGSWKTD-DERYATCFSGKLDILKYCRKAYP 81


>U56966-9|AAK68242.1|  684|Caenorhabditis elegans Amyloid
           precursor-like protein1, isoform b protein.
          Length = 684

 Score = 41.1 bits (92), Expect = 3e-04
 Identities = 16/26 (61%), Positives = 20/26 (76%)
 Frame = +2

Query: 302 KKVYPSHDITNIVEASHYVKVSXWCK 379
           +K YPS +ITNIVE SH V +S WC+
Sbjct: 77  RKAYPSMNITNIVEYSHEVSISDWCR 102



 Score = 36.3 bits (80), Expect = 0.008
 Identities = 19/51 (37%), Positives = 24/51 (47%)
 Frame = +1

Query: 163 PQVAVLCEAGSTYHPQYMSAAGRWTPDLTTKPHNCLKDKMEILDYCKKGIP 315
           P VA  C     Y  QYM+  G W  D   +   C   K++IL YC+K  P
Sbjct: 36  PMVAFSCG----YRNQYMTEEGSWKTD-DERYATCFSGKLDILKYCRKAYP 81


>U00240-1|AAC46470.1|  680|Caenorhabditis elegans beta-amyloid
           protein precursor protein.
          Length = 680

 Score = 41.1 bits (92), Expect = 3e-04
 Identities = 16/26 (61%), Positives = 20/26 (76%)
 Frame = +2

Query: 302 KKVYPSHDITNIVEASHYVKVSXWCK 379
           +K YPS +ITNIVE SH V +S WC+
Sbjct: 71  RKAYPSMNITNIVEYSHEVSISDWCR 96



 Score = 36.3 bits (80), Expect = 0.008
 Identities = 19/51 (37%), Positives = 24/51 (47%)
 Frame = +1

Query: 163 PQVAVLCEAGSTYHPQYMSAAGRWTPDLTTKPHNCLKDKMEILDYCKKGIP 315
           P VA  C     Y  QYM+  G W  D   +   C   K++IL YC+K  P
Sbjct: 30  PMVAFSCG----YRNQYMTEEGSWKTD-DERYATCFSGKLDILKYCRKAYP 75


>AC087794-7|AAG53706.1|  142|Caenorhabditis elegans Hypothetical
           protein Y32G9A.3 protein.
          Length = 142

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +1

Query: 22  PKRTSVVARRLQERNAAAKMTRAVLFISVFTVLLDVLHAGQATNGADP 165
           P   +++ +  +E     KM R  + +    VLL +++  QATN  DP
Sbjct: 42  PNFGNLLVKETKEDQLVFKMNRQKMKVKSHGVLLTIIYFSQATNVLDP 89


>AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical
            protein Y55F3BR.2 protein.
          Length = 1594

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -1

Query: 328  NVMTRVYLFCSSRGSPFCP*GSYAVXWSDRESTVRQLTCTAGGTC 194
            N +T+ +  C S G   CP G  A     R ++ RQ    A G C
Sbjct: 897  NALTQEHTCCGSDGQGVCPSGEKA-FMDPRTNSPRQCAMAADGKC 940


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,416,555
Number of Sequences: 27780
Number of extensions: 186860
Number of successful extensions: 419
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)