Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27h05
         (391 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    25   0.41 
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     23   0.94 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   2.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   2.9  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 24.6 bits (51), Expect = 0.41
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = +2

Query: 176 CYARQEARTTRSTCQLPDGGLPI*PXNRITASRTKWRSSTTAKKVYPSH 322
           CYA++  ++ R+  +LPD  +      ++ A++   +  T  K   P H
Sbjct: 217 CYAQKHVKSIRAVTKLPDTSMAKSFVRKVHATKPP-KPQTKTKPTSPYH 264


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 23.4 bits (48), Expect = 0.94
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
 Frame = +2

Query: 191 EARTTRSTCQLPDGGLPI*PXNRITASRTKWRSSTTA---KKVYPSHDITNIVEASHYVK 361
           EA TT+   + P    P    +R    RT+W  S T      ++  HD +N +    +  
Sbjct: 137 EAVTTKEKAKFPQEFFPECKWSRKGFLRTRWSISGTVFDLINIHLFHDASNFIAMETFPS 196

Query: 362 V 364
           V
Sbjct: 197 V 197


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 162 ISAICRLPGVEDVQQYGKNTYK 97
           ISA+C+  G+  VQ+     YK
Sbjct: 131 ISALCKELGISVVQKVSHTLYK 152


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -1

Query: 190  LPRIAL-LLEDQRHLSPARRGGRP 122
            +PR+A    ED+ +  P+  GGRP
Sbjct: 1341 VPRLAQDSSEDESYRGPSASGGRP 1364


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,774
Number of Sequences: 438
Number of extensions: 2205
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)