Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27h04
         (358 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar...    50   1e-07
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    42   4e-05
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha...    39   3e-04
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    34   0.008
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats...    31   0.070
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy...    30   0.093
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo...    29   0.21 
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    28   0.49 
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c...    28   0.49 
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    26   1.5  
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c...    25   2.6  
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch...    25   4.6  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    25   4.6  
SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|...    24   6.1  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    24   8.0  
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po...    24   8.0  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    24   8.0  

>SPBC530.10c |anc1||adenine nucleotide carrier
           Anc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 50.0 bits (114), Expect = 1e-07
 Identities = 24/32 (75%), Positives = 27/32 (84%)
 Frame = +3

Query: 249 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQ 344
           F  DF+ GG+SAAVSKTA APIERVKLL+Q Q
Sbjct: 27  FFFDFMMGGVSAAVSKTAAAPIERVKLLIQNQ 58


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 41.5 bits (93), Expect = 4e-05
 Identities = 16/28 (57%), Positives = 26/28 (92%)
 Frame = +3

Query: 264 LAGGISAAVSKTAVAPIERVKLLLQVQH 347
           L+GG++A VS+TAV+P+ER+K++ QVQ+
Sbjct: 25  LSGGVAATVSRTAVSPLERMKIIFQVQN 52


>SPAC17H9.08 |||mitochondrial coenzyme A
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 38.7 bits (86), Expect = 3e-04
 Identities = 16/33 (48%), Positives = 23/33 (69%)
 Frame = +3

Query: 255 KDFLAGGISAAVSKTAVAPIERVKLLLQVQHVS 353
           K  +AGG +  V+K+ VAP++RVK+L Q  H S
Sbjct: 19  KSGIAGGTAGCVAKSVVAPLDRVKILYQTNHAS 51


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 33.9 bits (74), Expect = 0.008
 Identities = 14/33 (42%), Positives = 23/33 (69%)
 Frame = +3

Query: 237 DPVAFAKDFLAGGISAAVSKTAVAPIERVKLLL 335
           DP      F++GGI+  VS+T  AP++R+K++L
Sbjct: 123 DPKNNVGYFISGGIAGIVSRTCTAPLDRLKVML 155



 Score = 27.1 bits (57), Expect = 0.86
 Identities = 9/32 (28%), Positives = 22/32 (68%)
 Frame = +3

Query: 261 FLAGGISAAVSKTAVAPIERVKLLLQVQHVSK 356
           +LAGG++ +V++  + P++ +K  +Q   +S+
Sbjct: 232 YLAGGMAGSVAQMFIYPVDTLKFRIQCSDLSR 263


>SPAC4G9.20c |||mitochondrial carrier with solute carrier
           repeats|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 30.7 bits (66), Expect = 0.070
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 240 PVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQ 344
           PV   + +++G IS   +   V P+E V++ LQ+Q
Sbjct: 109 PVTMPQYYVSGAISGLANSFLVGPVEHVRIRLQIQ 143



 Score = 27.5 bits (58), Expect = 0.65
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +3

Query: 246 AFAKDFLAGGISAAVSKTAVA-PIERVKLLLQVQ 344
           +F KDFLA G+S  V++  V  P + VK+ LQ Q
Sbjct: 16  SFTKDFLA-GVSGGVAQVLVGQPFDCVKVRLQSQ 48


>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 30.3 bits (65), Expect = 0.093
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +3

Query: 198 VKIT*SNKMSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQ 338
           V +T +N  SN   P   +  F+AGG++  +   A AP++ VK  LQ
Sbjct: 32  VLLTKANNASNERAPPPLSH-FIAGGVAGMLGAIATAPLDVVKTRLQ 77


>SPBC1604.04 |||thiamine pyrophosphate
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 29.1 bits (62), Expect = 0.21
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 264 LAGGISAAVSKTAVAPIERVKLLLQVQHVS 353
           LAGGIS+ + +  +AP + +K+ +Q+   S
Sbjct: 21  LAGGISSVICRFMIAPFDVIKIRMQITQSS 50


>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 27.9 bits (59), Expect = 0.49
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 255 KDFLAGGISAAVSKTAVAPIERVKLLLQVQ 344
           KD +AGG +   S   VAP++ VK   Q Q
Sbjct: 7   KDAIAGGAAGLASSLVVAPLDVVKTRKQAQ 36


>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 303

 Score = 27.9 bits (59), Expect = 0.49
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +3

Query: 264 LAGGISAAVSKTAVAPIERVKLLLQVQ 344
           ++GG+S A++ +   P++ VK LLQ +
Sbjct: 209 ISGGLSGAIASSLTTPLDVVKTLLQTR 235


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +2

Query: 98  YEITPNLLFKNQELVFRDPPSACAATPTSTY 190
           YE+  N  F N       PP AC+   TS Y
Sbjct: 362 YEMKQNDAFNNNNPATATPPPACSLLETSWY 392


>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 261 FLAGGISAAVSKTAVAPIERVKLLLQVQ 344
           FL+GG++A  + T   P E +K   Q+Q
Sbjct: 27  FLSGGLAACGAVTLTNPFEVIKTRFQLQ 54


>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
           Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 148

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 110 PNLLFKNQELVFRDPPSACAATPT 181
           P  + K  E + RDPP    A PT
Sbjct: 4   PKRIIKEIETLTRDPPPGIVAAPT 27


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +3

Query: 78  TLC--APVITKLLQISCSKIRS*CFVIPHPRVPQLPPRHIHLV 200
           T+C  AP +  L  ++C+K+   C  +  PR     PR+ HL+
Sbjct: 551 TICNIAPFVENLSFVTCAKLMQLCSSLSSPRFLFRNPRN-HLL 592


>SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +2

Query: 128 NQELVFRDPPSACAATPTSTYSPSEDHIIEQNVEP-RRSGR 247
           N EL     PS+ AATPT +   S   +I   +    RSG+
Sbjct: 75  NDELAESSKPSSGAATPTRSAPKSSAGLINSGLRALDRSGK 115


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 152 PPSACAATPTSTYSPSED 205
           PPSA +  P+S+ SPS D
Sbjct: 374 PPSATSFQPSSSRSPSVD 391


>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +2

Query: 155 PSACAATPTSTYSPSEDHIIEQNVEPRRSG 244
           P   A++P   YSPS      Q   P RSG
Sbjct: 126 PDYYASSPYGGYSPSGASSARQTPAPSRSG 155


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -1

Query: 334 SSSLTRSMGATAVLETAAEIPPARKSLANATGSARFD 224
           S  +  S+G++  L+ +   PP+  S  N   S+R+D
Sbjct: 131 SHPMLNSLGSSLSLKKSVSRPPSSMSRTNLDVSSRWD 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,409,506
Number of Sequences: 5004
Number of extensions: 27471
Number of successful extensions: 96
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)