Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27h01
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac...   133   1e-32
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    27   1.6  
SPBC16E9.05 |erg6||delta-sterol C-methyltransferase |Schizosacch...    27   2.1  
SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyc...    26   3.7  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    26   4.8  
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom...    25   6.4  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    25   6.4  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   8.5  

>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
           Ura3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score =  133 bits (321), Expect(2) = 1e-32
 Identities = 58/114 (50%), Positives = 77/114 (67%)
 Frame = +3

Query: 204 YLSPEVAHRIGVAAIKHGLFPPDQNEDPKILKTRLLDYDLSNPLGIAAGFDKHGDAVVGL 383
           + +PE +HR+ + A   G+ P D+  D   L   +      NP+G+AAGFDK  DA+ GL
Sbjct: 75  FTTPEFSHRVAILAASWGITPKDRVADDPSLAVEVWGKKFCNPIGLAAGFDKQADAISGL 134

Query: 384 MKLGFSIIEVGSVTPQPQPGNPKPRVFRLPEDGAVINRYGFXSIGHDEVYKKLE 545
           +  GFS +E+GSVTP+PQPGNPKPR FRL  D +VINRYGF SIGHD +  K++
Sbjct: 135 LNFGFSYLEIGSVTPKPQPGNPKPRYFRLKPDLSVINRYGFNSIGHDAILAKIQ 188



 Score = 21.8 bits (44), Expect(2) = 1e-32
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +3

Query: 546 GIEKAVMNRALLGVNLGK 599
           G+ ++++    LG+NLGK
Sbjct: 220 GVPRSLIPNKFLGINLGK 237


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 156 KDFNSYYENVLQPLSQYLSPEVAHRIG-VAAIKHGLFPPDQNEDPKILKT 302
           KD N YY+N  + L Q       HR   V +++  L PP +  +   LK+
Sbjct: 341 KDNNDYYDNAARILKQMFHVAERHRRNRVPSVQEVLNPPPRESEAWRLKS 390


>SPBC16E9.05 |erg6||delta-sterol C-methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +3

Query: 282 DPKILKTRLLDYDLSNPLGIAAGFDKHGDAVVGLMKLGFSIIEVGSVTPQPQPGNP 449
           D  I K R + Y++    GI     K  DAV  + K+GF+++E   +T    P  P
Sbjct: 237 DSSIPKHREIAYNIEVGDGIPQMVRKC-DAVEAIKKVGFNLLEEDDLTDHDNPDLP 291


>SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 140

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 560 GLLDSFQLFVYFVVPYAVEAISVDD 486
           G+L SF  F   ++ Y +E I VDD
Sbjct: 36  GILRSFDQFANLMLQYTIERIYVDD 60


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +3

Query: 351 FDKHGDAVVGLMKLGFSIIEVGSVTPQPQPGNPKPRVFRLPEDGAVINRYGFXSIG 518
           FD + D +      G  +++VG +TP   P N K     + E+GA I  +     G
Sbjct: 835 FDNNKDIIFYCAARGH-MVDVGGITPGSMPSNSK----AIYEEGAAIKTFKVVKAG 885


>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 566 HYGLLDSFQLFVYFVVPYAVEAISVDDSS 480
           H GL   F+ F+ F+V  A++ I   D S
Sbjct: 393 HQGLKAHFRNFMMFIVQQAIDPIDASDIS 421


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = +3

Query: 159 DFNSYYENVLQPLSQYLSPEVAHRIGVAAIKHGLFPPDQNE 281
           DFN    N +Q     L P++   + + ++ H  +   +NE
Sbjct: 244 DFNMLCSNSVQSAHTNLQPDITSFVAILSLSHEAYHCTENE 284


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 412 TSMIEKPSFIRPTTASPCLSNPAAMPSGLLRS 317
           TSMI   S    TT SP  +  + +PS ++ S
Sbjct: 205 TSMIPSSSSFTTTTGSPYYNTSSFLPSSVISS 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,257,424
Number of Sequences: 5004
Number of extensions: 42505
Number of successful extensions: 125
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)