Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27h01
         (599 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1577 + 34554819-34554995,34555672-34555754,34555906-345562...   131   5e-31
05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225           31   0.70 
01_06_1835 + 40223645-40224148,40224893-40225189,40225344-402254...    31   0.70 
02_01_0302 - 2021221-2023305                                           30   1.6  
09_02_0598 + 11087225-11087455                                         28   5.0  
04_01_0615 - 8060085-8060972                                           28   6.6  
02_05_0449 - 29107310-29107377,29107732-29107777,29107860-291079...    28   6.6  
05_04_0049 + 17497255-17497908                                         27   8.7  
02_05_0186 + 26569594-26570271                                         27   8.7  
02_02_0413 - 9960271-9960954                                           27   8.7  
02_02_0408 + 9901892-9902004,9903777-9903862,9905019-9905129,990...    27   8.7  

>04_04_1577 +
           34554819-34554995,34555672-34555754,34555906-34556229,
           34556347-34556602,34556951-34557031,34557106-34557213,
           34557300-34557329,34557475-34557612,34557737-34557774,
           34557858-34557957,34558194-34558268
          Length = 469

 Score =  131 bits (316), Expect = 5e-31
 Identities = 62/120 (51%), Positives = 79/120 (65%)
 Frame = +3

Query: 183 VLQPLSQYLSPEVAHRIGVAAIKHGLFPPDQNEDPKILKTRLLDYDLSNPLGIAAGFDKH 362
           ++ PL   L  E AHR+ V A  HG  P ++  DP +L   +     +NP+G+AAGFDK+
Sbjct: 96  LVNPLFALLDAEFAHRLAVTAASHGFVPREKRPDPSVLGLEIWGRKFTNPIGLAAGFDKN 155

Query: 363 GDAVVGLMKLGFSIIEVGSVTPQPQPGNPKPRVFRLPEDGAVINRYGFXSIGHDEVYKKL 542
            +AV GL+ +GF  +EVGSVTP PQ GNPKPR+FRL E GAVINR GF S G   V K+L
Sbjct: 156 AEAVEGLLGMGFGFVEVGSVTPLPQEGNPKPRIFRLREHGAVINRCGFNSEGIVVVAKRL 215


>05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225
          Length = 554

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = -1

Query: 377 HDRVSVLVEPGGYAKWIA*VV 315
           +DRV   ++PGGYA+W++ +V
Sbjct: 126 YDRVKEKIDPGGYAEWVSSIV 146


>01_06_1835 +
           40223645-40224148,40224893-40225189,40225344-40225439,
           40225595-40225748,40225773-40226011
          Length = 429

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 565 ITAFSIPSSFLYTSSCPMLXKPYLLMTAPSSGSR 464
           +  F++P++FLY +S P    P LL+     G+R
Sbjct: 18  LLVFAVPTTFLYLTSAPAASSPSLLLNLKPFGAR 51


>02_01_0302 - 2021221-2023305
          Length = 694

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = -2

Query: 487 TAPSSGSRKTLGLGF--PGCGCGVTEPTSMIEKPSFIRPTTASPCLSNPAAMPS 332
           T PSSGS  +   G+  P    G + PT  +  P    PTT  P  S+P+  PS
Sbjct: 578 TPPSSGSPPSPSSGYQPPSGQPGASPPTQHV--PGAGTPTTTPPSHSHPSTPPS 629


>09_02_0598 + 11087225-11087455
          Length = 76

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 482 SCHQQIWLXQHRARRSIQKAGRNREGRNESGTP 580
           S H+QIW      +   +K  R REG N++G P
Sbjct: 41  SIHRQIWANVAEGKAGEEKE-RGREGMNDAGPP 72


>04_01_0615 - 8060085-8060972
          Length = 295

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = +3

Query: 339 IAAGFDKHGDAVVGLMKLGF----SIIEVGSVTPQPQPGNPKPRV 461
           IAAG DK  + V+ L + GF    + +E    TP P P  PK  V
Sbjct: 24  IAAGHDKVTELVLAL-RAGFEAKRAAVETTPTTPSPMPTLPKAEV 67


>02_05_0449 -
           29107310-29107377,29107732-29107777,29107860-29107934,
           29108053-29108122,29108313-29108408,29108728-29108914,
           29109001-29109169,29109614-29109646,29109731-29109841,
           29110070-29111256,29112380-29112448,29114417-29114975,
           29115455-29115589,29115714-29115896
          Length = 995

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 494 QIW-LXQHRARRSIQKAGRNREGRNESGTPRRESG 595
           Q+W L +H    S + +G NR  RN+S T + +SG
Sbjct: 303 QLWMLEEHYTALSERSSGHNRHSRNDSST-KHKSG 336


>05_04_0049 + 17497255-17497908
          Length = 217

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +2

Query: 518 ARRSIQKAGRNREGRNESGTPRRESG 595
           ARR     GRN   R E  TP RE+G
Sbjct: 55  ARRRATAVGRNPRRRRERETPTRETG 80


>02_05_0186 + 26569594-26570271
          Length = 225

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 31/104 (29%), Positives = 39/104 (37%), Gaps = 5/104 (4%)
 Frame = +3

Query: 222 AHRIGVAAIK----HGLFPPDQNEDPKILKTRLLDYDLSNPLGIAAGFD-KHGDAVVGLM 386
           AH +   AIK    H  FP   +E P+       D   +  L  AA F     +A     
Sbjct: 88  AHDVAALAIKGRAAHLNFPDLAHELPRPATAAPKDVQAAAALAAAADFPASSANAGASNN 147

Query: 387 KLGFSIIEVGSVTPQPQPGNPKPRVFRLPEDGAVINRYGFXSIG 518
             G      GS +P P P      +F LP D  +  RYG  S G
Sbjct: 148 PDGSDDASAGSASPPPPPDAADDALFDLP-DLLLDLRYGPPSSG 190


>02_02_0413 - 9960271-9960954
          Length = 227

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 518 ARRSIQKAGRNREGRNESGTPRRESGK 598
           AR  +QK  R  E RN  G+P  E GK
Sbjct: 84  ARWDLQKKRREEEERNGGGSPEPELGK 110


>02_02_0408 +
           9901892-9902004,9903777-9903862,9905019-9905129,
           9905182-9905307,9905546-9905673,9906634-9906726,
           9907873-9908059,9908877-9909637
          Length = 534

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 518 ARRSIQKAGRNREGRNESGTPRRESGK 598
           AR  +QK  R  E RN  G+P  E GK
Sbjct: 391 ARWDLQKKRREEEERNGGGSPEPELGK 417


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,732,974
Number of Sequences: 37544
Number of extensions: 292250
Number of successful extensions: 962
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)