Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27h01
         (599 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003141-7|AAK21481.1|  411|Caenorhabditis elegans Hypothetical ...   118   2e-27
Z81079-8|CAD56581.2| 1175|Caenorhabditis elegans Hypothetical pr...    31   0.83 
Z80215-18|CAD56563.2| 1175|Caenorhabditis elegans Hypothetical p...    31   0.83 
AF099915-8|AAC68768.2|  231|Caenorhabditis elegans Hypothetical ...    29   2.5  
AF068713-12|AAC17802.1|  139|Caenorhabditis elegans Ground-like ...    28   4.4  
AF003134-6|AAB54146.3|  827|Caenorhabditis elegans Hypothetical ...    28   4.4  
AC006636-3|AAF39799.1|  139|Caenorhabditis elegans Ground-like (...    27   7.7  

>AF003141-7|AAK21481.1|  411|Caenorhabditis elegans Hypothetical
           protein W02D3.2 protein.
          Length = 411

 Score =  118 bits (285), Expect = 2e-27
 Identities = 67/151 (44%), Positives = 93/151 (61%), Gaps = 7/151 (4%)
 Frame = +3

Query: 168 SYYENVLQPL-SQYLSPEVAHRIGVAAIKHGLFPP---DQNEDPKILKTRLLDYDLSNPL 335
           ++Y+  + P+  +++  E +HR  V A   GL P    ++ E P+ LK  L   +  NP+
Sbjct: 45  TFYKKAVMPMVHKFVDGEDSHRWAVRAASWGLLPRFGWNRKEYPE-LKCELFGREFKNPI 103

Query: 336 GIAAGFDKHGDAVVGLMK-LGFSIIEVGSVTPQPQPGNPKPRVFRLPEDGAVINRYGFXS 512
           G+AAGFDK G A+  L K  GF +IE+GSVTP PQPGN +PRVFRL ED  VINRYGF S
Sbjct: 104 GLAAGFDKDGQAITQLAKNSGFGLIEIGSVTPIPQPGNNRPRVFRLLEDEGVINRYGFNS 163

Query: 513 IGHDEVYKKLEGIEKAVM--NRALLGVNLGK 599
            G   V++++     + +  + A  GVNLGK
Sbjct: 164 DGVGRVHQRVRSARDSWVPESYAYFGVNLGK 194


>Z81079-8|CAD56581.2| 1175|Caenorhabditis elegans Hypothetical
           protein C36B1.1d protein.
          Length = 1175

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +2

Query: 467 TPGGRSCHQQIWLXQHRARRSIQKAGRNREGRNESGTP 580
           T G R C +Q W      RR I+K  + R+G   SGTP
Sbjct: 587 TQGSRQCDEQWW-----RRRKIEKELQGRKGAEGSGTP 619


>Z80215-18|CAD56563.2| 1175|Caenorhabditis elegans Hypothetical
           protein C36B1.1d protein.
          Length = 1175

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +2

Query: 467 TPGGRSCHQQIWLXQHRARRSIQKAGRNREGRNESGTP 580
           T G R C +Q W      RR I+K  + R+G   SGTP
Sbjct: 587 TQGSRQCDEQWW-----RRRKIEKELQGRKGAEGSGTP 619


>AF099915-8|AAC68768.2|  231|Caenorhabditis elegans Hypothetical
           protein E02H9.2 protein.
          Length = 231

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3

Query: 336 GIAAGFDKHGDAVVGLMKLGFSIIEVGSVTPQPQPGNPKP 455
           G A   D+H +   GL  LG       + TP+P P  PKP
Sbjct: 174 GSACDPDRHNND--GLCSLGAPTTTTTTTTPKPPPATPKP 211


>AF068713-12|AAC17802.1|  139|Caenorhabditis elegans Ground-like
           (grd related) protein28 protein.
          Length = 139

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 442 PGCGCGVTEPTSMIEKPSFIR 380
           P CGCG  +  S+ EKP+F +
Sbjct: 39  PSCGCGGRKKRSLPEKPTFYK 59


>AF003134-6|AAB54146.3|  827|Caenorhabditis elegans Hypothetical
           protein ZC581.9 protein.
          Length = 827

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 21/63 (33%), Positives = 29/63 (46%)
 Frame = -2

Query: 529 TSSCPMLXKPYLLMTAPSSGSRKTLGLGFPGCGCGVTEPTSMIEKPSFIRPTTASPCLSN 350
           +SS  M   P +  T+  +  RKTLGL  P  G       SM+     + PT +SP   +
Sbjct: 3   SSSNFMAPPPKMNKTSSMNSLRKTLGLKKPNNG-----ELSMVPSRPIVSPTLSSPLQGS 57

Query: 349 PAA 341
            AA
Sbjct: 58  GAA 60


>AC006636-3|AAF39799.1|  139|Caenorhabditis elegans Ground-like (grd
           related) protein27 protein.
          Length = 139

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 442 PGCGCGVTEPTSMIEKPSF 386
           P CGCG  +  S+ EKP F
Sbjct: 39  PACGCGGRKKRSLPEKPEF 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,575,030
Number of Sequences: 27780
Number of extensions: 246368
Number of successful extensions: 749
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)