Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27h01
         (599 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    25   0.43 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    25   0.43 
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   4.0  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   5.3  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   7.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.2  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   9.2  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +3

Query: 255 GLFPPDQNEDPKIL-KTRLLDYDLSNPLGIAAGFDKHGDAVVGLMKLGF 398
           GL P   N D  +  K  LL+    +  G    FD+HGD +     L F
Sbjct: 357 GLCPSMANYDRGVFYKNYLLNVSFIDAAGSEVKFDEHGDGLARYEILNF 405


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +3

Query: 255 GLFPPDQNEDPKIL-KTRLLDYDLSNPLGIAAGFDKHGDAVVGLMKLGF 398
           GL P   N D  +  K  LL+    +  G    FD+HGD +     L F
Sbjct: 447 GLCPSMANYDRGVFYKNYLLNVSFIDAAGSEVKFDEHGDGLARYEILNF 495


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 432 PQPGNPKPRVFRLPE 476
           PQP  P PR+ R PE
Sbjct: 107 PQPRPPHPRLRREPE 121



 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 432 PQPGNPKPRVFRLPE 476
           PQP  P PR+ R PE
Sbjct: 133 PQPRPPHPRLRREPE 147


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/29 (24%), Positives = 15/29 (51%)
 Frame = -1

Query: 386 HQAHDRVSVLVEPGGYAKWIA*VVVKQSC 300
           ++   + +VL+ P G   W+   + + SC
Sbjct: 123 YEVRYKSNVLIYPNGDVLWVPPAIYQSSC 151


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/37 (21%), Positives = 19/37 (51%)
 Frame = -1

Query: 410 FDDREAQFHQAHDRVSVLVEPGGYAKWIA*VVVKQSC 300
           +++ + Q+  A    +V+V   G   W++  + + SC
Sbjct: 95  YNNADPQYSSAVINTNVIVSHTGEVVWLSHGIFRSSC 131


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +3

Query: 414 GSVTPQPQPGNPKPRVFRLPEDGAVI 491
           G+V      GNP+P +  +  DG+ +
Sbjct: 20  GAVVECQARGNPQPDIIWVRADGSAV 45


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 73  FCDIVVVNRQINLLFVLS 20
           FC+ + ++R  N ++VLS
Sbjct: 347 FCNDLSIDRSTNTMYVLS 364


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,855
Number of Sequences: 438
Number of extensions: 3252
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)