Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27g21
         (279 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    23   6.1  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    23   6.1  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    23   6.1  
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom...    23   8.0  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    23   8.0  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    23   8.0  

>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = -3

Query: 274 SAANVTXTRSPRDSRPXKPADIFAXKLFQHSENCSSDAMIATTRRGTYPKLCT 116
           S +N+T   SPR   P +   +    +   +E  S + M  + + G  PK  T
Sbjct: 390 SLSNMTVAESPRTDTPREINGLVDSSVTNGNEKFSVEIMNDSNKIGLNPKSFT 442



 Score = 23.0 bits (47), Expect = 8.0
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 274 SAANVTXTRSPRDSRPXKPADIFAXKLFQHSENCSS 167
           +A NVT   S  DSRP +   + +  L   S N S+
Sbjct: 312 AATNVTGYVSETDSRPNRANSLDSAVLLVQSSNKSN 347


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 250 RSPRDSRPXKPADIFAXKLFQHSENCSSD 164
           R P D +  KP +IF     Q+  + S++
Sbjct: 120 REPIDRKSNKPGEIFVGATLQNESSTSTE 148


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -1

Query: 99  ETF--EKNITQCSQQSTLHISEVRPPRLNDVL 10
           ETF    +ITQ S+ STL +S   P  ++D++
Sbjct: 437 ETFVTTDDITQLSRTSTLSLSTASPRLVHDLV 468


>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +1

Query: 82  IFFKCFSYRNYKYKA*DRFHVESSLSWRRTNN 177
           ++FK   Y  + YK  D F   +  +W   N+
Sbjct: 487 VYFKGMPYNEHNYKELDSFEPITKEAWMLGNS 518


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 120 VLIIPVGETFEKNITQCSQQSTLHISEVR 34
           +L+ P    +  N+ QC+   TLH  ++R
Sbjct: 222 LLVRPASMLWPVNLVQCTLIKTLHRKDLR 250


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 99  ETFEKNITQCSQQSTLHISEVRPPR 25
           E  +++    SQQ  LH+S  +PP+
Sbjct: 284 EAIQQSRAVISQQLPLHVSPRKPPK 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,127,103
Number of Sequences: 5004
Number of extensions: 20195
Number of successful extensions: 57
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 61566900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)