Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27g21
(279 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0609 - 18929600-18929646,18929753-18929924,18930304-189304... 27 2.8
04_04_0489 + 25600543-25601368,25601441-25602282 27 2.8
01_05_0604 - 23583244-23584989 27 2.8
02_03_0062 + 14586152-14586461,14586792-14587075,14587807-14588079 26 3.7
06_01_0160 - 1205454-1205482,1205647-1205732,1205903-1205956,120... 26 4.9
01_02_0130 - 11424904-11425142,11425295-11425416,11425461-114255... 26 4.9
12_02_0871 + 23865343-23866016,23866122-23866170,23866276-238663... 25 6.5
07_03_0871 - 22183149-22183232,22183706-22183964,22184012-221840... 25 8.6
06_03_0007 - 15325720-15325739,15326236-15326383,15326512-153270... 25 8.6
05_07_0277 - 28909502-28909621,28910053-28910583,28910629-289107... 25 8.6
04_01_0476 + 6215401-6217445,6217538-6217630,6218031-6218133,621... 25 8.6
03_02_0273 - 7036125-7037999 25 8.6
>09_04_0609 -
18929600-18929646,18929753-18929924,18930304-18930498,
18930691-18930801,18930885-18931097,18931643-18931720,
18931894-18932001,18932175-18932316,18932413-18933761,
18934492-18935121
Length = 1014
Score = 26.6 bits (56), Expect = 2.8
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +3
Query: 15 HHSNGEDVLQKCVKC 59
H NG V+QKC++C
Sbjct: 795 HDQNGNHVIQKCIEC 809
>04_04_0489 + 25600543-25601368,25601441-25602282
Length = 555
Score = 26.6 bits (56), Expect = 2.8
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +1
Query: 85 FFKCFSYRNYKYKA*DRFHVESSLSW 162
FFK + Y NY+Y +R ++ +++W
Sbjct: 487 FFKKWMYANYRYLMGERPRLDEAMAW 512
>01_05_0604 - 23583244-23584989
Length = 581
Score = 26.6 bits (56), Expect = 2.8
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +1
Query: 85 FFKCFSYRNYKYKA*DRFHVESSLSW 162
FFK + Y NY+Y +R ++ +++W
Sbjct: 513 FFKKWMYANYRYLMGERPRLDEAMAW 538
>02_03_0062 + 14586152-14586461,14586792-14587075,14587807-14588079
Length = 288
Score = 26.2 bits (55), Expect = 3.7
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 158 HGVGRTIFTML-EQFPRKYVSRLSWPAVAWRSRXRNVGCR 274
H VG T+FT ++ P KYV+ + P+ R R G R
Sbjct: 216 HNVG-TLFTKAGDEVPHKYVTPTATPSTPMEERFRIQGVR 254
>06_01_0160 -
1205454-1205482,1205647-1205732,1205903-1205956,
1206035-1206130,1207332-1207448,1207834-1207952
Length = 166
Score = 25.8 bits (54), Expect = 4.9
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Frame = +2
Query: 98 SPTGIIS-TKLRIGSTSSRRYHGV----GRTIFTMLEQFPRKYVSRLSWPAVAWRSRXRN 262
SP G++ +L G +SS G + + + ++ SRL WP +A R R
Sbjct: 37 SPEGVVGYVELIGGDSSSSAAMGEDTQEAKALMIAIVPHLHRWYSRLRWPLLA--GRLRR 94
Query: 263 VGC 271
VGC
Sbjct: 95 VGC 97
>01_02_0130 -
11424904-11425142,11425295-11425416,11425461-11425546,
11425642-11425858,11426788-11426832,11428385-11428593,
11428706-11428936
Length = 382
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 224 SWPAVAWRSRXRNVGCR 274
SW +VAW S +VGCR
Sbjct: 257 SWISVAWLSYPLDVGCR 273
>12_02_0871 +
23865343-23866016,23866122-23866170,23866276-23866356,
23866599-23866718,23866957-23867055,23867135-23867194,
23867316-23867410,23867483-23867508,23869212-23869285,
23870194-23870259,23871027-23871099,23871585-23871622,
23873758-23873871,23876079-23876195,23876288-23876368,
23876468-23876536,23876631-23876669,23876809-23876973,
23877380-23877484,23877569-23877637,23877754-23877816,
23877903-23878021,23878124-23878348,23878409-23878610
Length = 940
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -3
Query: 229 PXKPADIFAXKLFQHSENCSSDAMIATTRRGTYP 128
P + + KLF+H C +A +R+G YP
Sbjct: 572 PANVTEEYLRKLFEH---CGEVVRVAVSRKGQYP 602
>07_03_0871 -
22183149-22183232,22183706-22183964,22184012-22184091,
22184308-22184667,22184757-22184900,22184986-22185141,
22185236-22185401,22185480-22185512,22186188-22186270,
22186341-22186443,22186540-22186628
Length = 518
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/36 (30%), Positives = 24/36 (66%)
Frame = +2
Query: 26 RGGRTSEMCKVLCWEH*VIFFSNVSPTGIISTKLRI 133
+GG T ++ ++C E FF+ ++ +G+I++ LR+
Sbjct: 242 QGGMTGDL-SLMCPEFIQSFFAGLAASGMITSALRL 276
>06_03_0007 -
15325720-15325739,15326236-15326383,15326512-15327025,
15327077-15327507
Length = 370
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = -1
Query: 150 RLDVEPILSFVLIIPVGETFEKNITQCSQQSTLHIS 43
+L++ P + L++P+ + FE+N+ + Q L +S
Sbjct: 288 KLEIRPRRA--LVLPIRKNFERNVVEYLSQELLQMS 321
>05_07_0277 -
28909502-28909621,28910053-28910583,28910629-28910721,
28910758-28911501
Length = 495
Score = 25.0 bits (52), Expect = 8.6
Identities = 20/65 (30%), Positives = 31/65 (47%)
Frame = -1
Query: 195 CSSIVKIVRPTP**RRLDVEPILSFVLIIPVGETFEKNITQCSQQSTLHISEVRPPRLND 16
CSS+ ++ P RL +LS +I G T E +I++ L + E + LND
Sbjct: 206 CSSLTRM---PPAIARLAKLQVLSAYII---GVTHESSISELKPLKKLKVQEAKDAILND 259
Query: 15 VLDLI 1
DL+
Sbjct: 260 KHDLV 264
>04_01_0476 +
6215401-6217445,6217538-6217630,6218031-6218133,
6218237-6218254
Length = 752
Score = 25.0 bits (52), Expect = 8.6
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +1
Query: 148 SSLSWRRTNNFHYA 189
+S SW RT+NF+YA
Sbjct: 604 ASWSWTRTSNFNYA 617
>03_02_0273 - 7036125-7037999
Length = 624
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 100 SYRNYKYKA*DRFHVESSLSWRRTNN 177
+YR Y+ KA HV LSW ++ N
Sbjct: 269 AYRRYRKKAPVPKHVSPKLSWTKSLN 294
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,163,278
Number of Sequences: 37544
Number of extensions: 123787
Number of successful extensions: 296
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 267635896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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