Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27g21
(279 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23454-6|AAC46521.1| 192|Caenorhabditis elegans Hypothetical pr... 27 1.5
AF125969-1|AAD14762.2| 1484|Caenorhabditis elegans Hypothetical ... 27 1.5
Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical pr... 26 3.5
U64855-2|AAB04981.2| 1080|Caenorhabditis elegans Importin beta f... 26 4.6
Z81527-3|CAB04271.1| 296|Caenorhabditis elegans Hypothetical pr... 25 6.1
Z81039-2|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical pr... 25 6.1
M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger pro... 25 6.1
Z92826-9|CAD90172.1| 701|Caenorhabditis elegans Hypothetical pr... 25 8.0
Z92826-5|CAB07318.1| 198|Caenorhabditis elegans Hypothetical pr... 25 8.0
Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical pr... 25 8.0
AL132860-33|CAB60507.2| 701|Caenorhabditis elegans Hypothetical... 25 8.0
AC084161-1|ABD63205.1| 1375|Caenorhabditis elegans Hypothetical ... 25 8.0
>U23454-6|AAC46521.1| 192|Caenorhabditis elegans Hypothetical
protein C10A4.7 protein.
Length = 192
Score = 27.5 bits (58), Expect = 1.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 183 LCWNNFXANMSAGFXGLLSRGDLVXVTL 266
LCW + AN++A F LL+ G + T+
Sbjct: 129 LCWEDENANVAAAFILLLASGTITFFTM 156
>AF125969-1|AAD14762.2| 1484|Caenorhabditis elegans Hypothetical
protein Y38C9A.1 protein.
Length = 1484
Score = 27.5 bits (58), Expect = 1.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 253 TRSPRDSRPXKPADIFAXKLFQHSENCSSDAM 158
TRSP+ +P KP + FQ+S + SS A+
Sbjct: 1362 TRSPQVQKPIKPTASRSFTSFQNSPSTSSSAL 1393
>Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical
protein H02I12.1 protein.
Length = 1319
Score = 26.2 bits (55), Expect = 3.5
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -1
Query: 108 PVGETFEKNITQCSQ 64
P+GETF+K + CS+
Sbjct: 602 PIGETFDKTLRSCSE 616
>U64855-2|AAB04981.2| 1080|Caenorhabditis elegans Importin beta
family protein 4,isoform a protein.
Length = 1080
Score = 25.8 bits (54), Expect = 4.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 123 FVLIIPVGETFEKNITQCSQQSTLHISEVR 34
F+ IPVG FE NIT+ ++ L + R
Sbjct: 231 FLTWIPVGYVFETNITELLSENFLSLEVYR 260
>Z81527-3|CAB04271.1| 296|Caenorhabditis elegans Hypothetical
protein F35E12.3 protein.
Length = 296
Score = 25.4 bits (53), Expect = 6.1
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 42 QKCVKCSVGNIELYFFQMF 98
++C+KCS NI + FF F
Sbjct: 200 ERCIKCSELNIPMEFFLQF 218
>Z81039-2|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical protein
C25D7.3 protein.
Length = 2150
Score = 25.4 bits (53), Expect = 6.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 45 KCVKCSVGNIELYFFQMFLL 104
KCV+CS+ N +YF LL
Sbjct: 2079 KCVQCSIRNQSVYFSSYSLL 2098
>M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger protein
protein.
Length = 2150
Score = 25.4 bits (53), Expect = 6.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 45 KCVKCSVGNIELYFFQMFLL 104
KCV+CS+ N +YF LL
Sbjct: 2079 KCVQCSIRNQSVYFSSYSLL 2098
>Z92826-9|CAD90172.1| 701|Caenorhabditis elegans Hypothetical
protein Y56A3A.1a protein.
Length = 701
Score = 25.0 bits (52), Expect = 8.0
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +2
Query: 170 RTIFTMLEQFPRKYVSRLSWPAVAW 244
+ F + + PR Y+S++S+P +W
Sbjct: 572 KATFPLDSEKPRNYLSKVSFPVPSW 596
>Z92826-5|CAB07318.1| 198|Caenorhabditis elegans Hypothetical
protein Y56A3A.1b protein.
Length = 198
Score = 25.0 bits (52), Expect = 8.0
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +2
Query: 170 RTIFTMLEQFPRKYVSRLSWPAVAW 244
+ F + + PR Y+S++S+P +W
Sbjct: 69 KATFPLDSEKPRNYLSKVSFPVPSW 93
>Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical
protein F33E2.6 protein.
Length = 846
Score = 25.0 bits (52), Expect = 8.0
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -1
Query: 84 NITQC-SQQSTLHISEVRPPRLNDVLDLI 1
NI C QQS L PPR+N+ + LI
Sbjct: 429 NIPYCWQQQSRLFAPSPPPPRVNNTMPLI 457
>AL132860-33|CAB60507.2| 701|Caenorhabditis elegans Hypothetical
protein Y56A3A.1a protein.
Length = 701
Score = 25.0 bits (52), Expect = 8.0
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +2
Query: 170 RTIFTMLEQFPRKYVSRLSWPAVAW 244
+ F + + PR Y+S++S+P +W
Sbjct: 572 KATFPLDSEKPRNYLSKVSFPVPSW 596
>AC084161-1|ABD63205.1| 1375|Caenorhabditis elegans Hypothetical
protein Y92H12A.5 protein.
Length = 1375
Score = 25.0 bits (52), Expect = 8.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 225 ESLLTYLRGNCSSIVKIVRP 166
E +L +L NC I+KIV P
Sbjct: 635 EEILDHLLQNCHKIIKIVAP 654
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,262,163
Number of Sequences: 27780
Number of extensions: 110901
Number of successful extensions: 262
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 248937694
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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