Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27g21
         (279 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      35   2e-04
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      33   5e-04
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          31   0.003
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   1.6  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   2.8  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   2.8  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   3.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    20   6.5  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    19   8.6  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    19   8.6  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    19   8.6  

>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 34.7 bits (76), Expect = 2e-04
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 159 MASDEQFSLCWNNFXANMSAGFXGLLSRGDLVXVTLAAE 275
           M   + F L WNN+ +++++ F  L    D V VTLA E
Sbjct: 1   MVDTQHFCLRWNNYQSSITSAFENLRDDEDFVDVTLACE 39


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 33.5 bits (73), Expect = 5e-04
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 159 MASDEQFSLCWNNFXANMSAGFXGLLSRGDLVXVTLAAE 275
           M   + F L WNN+ +++++ F  L    D V VTLA +
Sbjct: 1   MVDTQHFCLRWNNYQSSITSAFENLRDDEDFVDVTLACD 39


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 31.1 bits (67), Expect = 0.003
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 171 EQFSLCWNNFXANMSAGFXGLLSRGDLVXVTLA 269
           + + L WNN+ +NM++ F  LL     V VTLA
Sbjct: 9   QHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLA 41


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 1.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 136 FHVESSLSWRRTNNFHY 186
           +   +S SWR TNN  Y
Sbjct: 211 YDFRNSRSWRITNNLFY 227


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = -3

Query: 178 NCSSDAMIATTRRGTYPKLCTYNS 107
           NC  D +    +RGT  + C + +
Sbjct: 479 NCDIDCINRVVQRGTKMQFCIFRT 502


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = +1

Query: 22  QTGRTYFRNV*SALLGTLSYIFFKCFSYRNYKYKA*DRFHVESSLSWRRTNNFHYAGTIS 201
           + G  Y R+    L+    + +   F+++  K      F V   LS  R N F  A TIS
Sbjct: 200 RVGTKYHRS--GGLMNVERFPYQPPFAWKILKAAEEAGFGVSEDLSGDRINGFTVAQTIS 257


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 157 SWRRTNNFHY 186
           SWR T+NF Y
Sbjct: 209 SWRITHNFFY 218


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 19.8 bits (39), Expect = 6.5
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 83  FFSNVSPTGI 112
           FFS+VSPT +
Sbjct: 99  FFSSVSPTSL 108


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 19.4 bits (38), Expect = 8.6
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +1

Query: 37  YFRNV*SALLGTLSYIFFKCFSYRNYKYKA*DRFH 141
           YF N   + +  L++ F     YRN   K   R H
Sbjct: 77  YFLNAKVSEIAALNHKFSSVTLYRNKTVKYSARMH 111


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 19.4 bits (38), Expect = 8.6
 Identities = 5/16 (31%), Positives = 12/16 (75%)
 Frame = -1

Query: 225 ESLLTYLRGNCSSIVK 178
           +  L+Y RGN +++++
Sbjct: 67  QGFLSYWRGNLANVIR 82


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 19.4 bits (38), Expect = 8.6
 Identities = 5/16 (31%), Positives = 12/16 (75%)
 Frame = -1

Query: 225 ESLLTYLRGNCSSIVK 178
           +  L+Y RGN +++++
Sbjct: 67  QGFLSYWRGNLANVIR 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,825
Number of Sequences: 438
Number of extensions: 1461
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5369883
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)