Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27g20
         (370 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    29   0.23 
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa...    27   0.93 
SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyce...    25   2.8  
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    25   3.7  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    25   4.9  
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha...    25   4.9  
SPAC1952.08c |||pyridoxamine 5'-phosphate oxidase |Schizosacchar...    24   6.5  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    24   6.5  
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    24   8.6  
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    24   8.6  
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    24   8.6  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    24   8.6  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    24   8.6  

>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 29.1 bits (62), Expect = 0.23
 Identities = 21/75 (28%), Positives = 34/75 (45%)
 Frame = -2

Query: 369 RKMLLVPTLLEPSLTMSSIDSGFSAIYIWLNLLSPCAMRKLATRALLSFTFNRLFSSDST 190
           R  LL   +L P  T  S++   +A   + N L  C+  K    ++L    ++LF+  S 
Sbjct: 740 RHALLAKLVLFPENTADSLNEVLAA---YKNTLDLCSQDKRKQSSVLKINLSKLFTLHSC 796

Query: 189 DSLLCPKLGDASVKE 145
            SL   +LG   V +
Sbjct: 797 LSLALQRLGYGDVSK 811


>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
           Nse6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 522

 Score = 27.1 bits (57), Expect = 0.93
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
 Frame = -2

Query: 354 VPTLLEPSLTMSSIDSGFSAIYIWLNLLSPCAMRKLATRALLSFTF---NRLFSSDSTDS 184
           +P  L P   +S+I     +  +W+ +LS  +      R  ++FT     +  + DS  S
Sbjct: 318 LPISLNPDFLISNIHKVSESPRVWVTILSSLSRSCQKFRKKIAFTLFVGKQSKNDDSDFS 377

Query: 183 LLCPKLGDAS 154
            LC +L + S
Sbjct: 378 SLCQRLDEIS 387


>SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +2

Query: 146 SLTEASPSLGQSSESVESDENKRLNVKLN--NARVANLRIAHGDNKLSQ 286
           SLT+A  SL + S+SVE  +  +L+ +L+    ++AN R   G   L Q
Sbjct: 16  SLTDAIDSLDKRSDSVEV-KIAKLDAQLSVFQQKIANTRPGPGQTALKQ 63


>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 257 IAHGDNKLSQMYIAEKPLSIDDIVKEGSNKV 349
           I HG+NK ++  IA     I DIV   +N V
Sbjct: 274 IVHGNNKNARKNIATLKSKIRDIVNSDANVV 304


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 263 HGDNKLSQMYIAEKPLSIDDIVKEGSNKVGTNSIF 367
           +G  KL  +   E PLS +D++  GSN   T+ +F
Sbjct: 508 NGSMKLDSIQ-GEIPLSNNDVLYRGSNLRNTSELF 541


>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -2

Query: 339 EPSLTMSSIDSGFSAIYIWLNLLSPCAMRKLATRALLSFTFN 214
           +P++    I SG+   Y +LNL+ P     +   ++L    N
Sbjct: 27  KPNIRKEMISSGYVNTYEYLNLILPPEENAITNLSMLELATN 68


>SPAC1952.08c |||pyridoxamine 5'-phosphate oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = +2

Query: 173 GQSSESVESDENKRLNVKLNNARVANLRI 259
           G + + VE ++ + + +KL +AR+ + R+
Sbjct: 147 GNTKQYVEGEDMRIIKIKLESARICDQRL 175


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -2

Query: 282  LNLLSPCAMRKLATRALLSFTFNRLFSSDSTDSLLCPKLGDASVKEFKFN 133
            LN++     +KLA   +L +T  R  SS     L C  + D     FK++
Sbjct: 905  LNVIGRKIWKKLAE--ILGYTSRRFLSSAEVKWLFCLGMRDGLKPSFKYH 952


>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 314

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 233 NARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSN 343
           NA V    + HG  +  + YI + PLS  D V+  SN
Sbjct: 81  NADVVGFSLPHGVKQSFENYIQKYPLS--DQVENSSN 115


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 298 GNIHLAQFIIAVCDAQIGHP 239
           G +HL+ F+  + D Q+ HP
Sbjct: 20  GKVHLSNFLPIINDLQLLHP 39


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 230 NNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGS 340
           N AR+  L     D + ++  I EKP+  D++ ++ S
Sbjct: 168 NGARIEELNSDEEDAEQAEEEILEKPVPKDEVAEKHS 204


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -2

Query: 285 WLNLLSPCAMRKLATRALLSFTFNRLFSSDSTDS 184
           W+    PC   K   +   S  FN  F++ ++DS
Sbjct: 378 WIKAWDPCVFGKSRLQPSKSMRFNPRFTNITSDS 411


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 203 ENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEK 304
           E+ R  V++ N       +  GDN L+ +Y+AE+
Sbjct: 688 EDARQTVQMLNNSSHRCMMITGDNPLTAVYVAEQ 721


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,431,087
Number of Sequences: 5004
Number of extensions: 24849
Number of successful extensions: 74
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)