Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27g20
         (370 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0060 + 3729613-3729863,3730377-3730392                           28   2.0  
02_05_0642 + 30576158-30576289,30576436-30576503,30577167-305774...    28   2.0  
10_08_1063 - 22628642-22628716,22628806-22629012,22629325-226294...    28   2.6  
06_03_0830 + 25159758-25162460                                         28   2.6  
03_02_0395 - 8091389-8093119,8093637-8093720,8093754-8094773           28   2.6  
10_08_0762 - 20410681-20411834,20411999-20412098,20412200-204122...    27   6.1  
08_02_0162 + 13464698-13464974,13465719-13465837,13465920-134665...    27   6.1  
10_08_0288 + 16527666-16527837,16527915-16528132,16528491-165285...    26   8.1  

>09_02_0060 + 3729613-3729863,3730377-3730392
          Length = 88

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 254 ANWPPGRY*ALRLIVCSRLIPPIRC 180
           A WPP RY + R   C R +P + C
Sbjct: 35  AKWPPSRYRSYR-ATCCRAVPSLLC 58


>02_05_0642 +
           30576158-30576289,30576436-30576503,30577167-30577487,
           30578318-30579146
          Length = 449

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -3

Query: 209 CSRLIPPIRC-SALNWATPRLR 147
           CS  +PP+RC   L W+ PR++
Sbjct: 23  CSSRLPPLRCFVGLRWSAPRIQ 44


>10_08_1063 -
           22628642-22628716,22628806-22629012,22629325-22629433,
           22629547-22629657,22630466-22630513,22630636-22630713,
           22632151-22632254,22632360-22632470,22632555-22632791
          Length = 359

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = +2

Query: 125 TNALNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEK 304
           T   N+  L + SP+    S+ +E D  KR+           L I +G + +     +E+
Sbjct: 154 TGLHNIVHLPQKSPAFDLLSKMLEYDPRKRITAAQALEHEIRLVILNGGSMIYYSNPSEQ 213

Query: 305 PLSID 319
           P S+D
Sbjct: 214 PFSVD 218


>06_03_0830 + 25159758-25162460
          Length = 900

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 23/83 (27%), Positives = 34/83 (40%)
 Frame = +2

Query: 122 WTNALNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAE 301
           W  +   ++   ASP      E   S  ++R    L +  V+    A     LS   +  
Sbjct: 554 WKGSAATSAFRPASPRCTPDGEKSVSASSQRTGNALFDLNVSESDNATAGEPLSAAIL-- 611

Query: 302 KPLSIDDIVKEGSNKVGTNSIFL 370
            PLS D + K+ S  VG NS+ L
Sbjct: 612 -PLSSDIVRKDASATVGLNSLEL 633


>03_02_0395 - 8091389-8093119,8093637-8093720,8093754-8094773
          Length = 944

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 15/69 (21%), Positives = 33/69 (47%)
 Frame = +2

Query: 134 LNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLS 313
           ++ + L +    LG   E  + DE  RL   + +   A+  +  GDN    M+ ++  + 
Sbjct: 450 ISKDELVQCWTGLGLLPELADVDEAHRLAHSVISVLEASRLVERGDNHRYNMFPSDTHVR 509

Query: 314 IDDIVKEGS 340
           + D+V++ +
Sbjct: 510 LHDVVRDAA 518


>10_08_0762 -
           20410681-20411834,20411999-20412098,20412200-20412298,
           20412563-20414133,20415080-20415128
          Length = 990

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +2

Query: 140 LNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRI 259
           L S  + + SLGQ S   E D +   N  ++NA ++ LRI
Sbjct: 791 LKSRPDNANSLGQESSKHEPDASTGTNDLIDNAVMSRLRI 830


>08_02_0162 +
           13464698-13464974,13465719-13465837,13465920-13466579,
           13466686-13466763,13466849-13466938,13467241-13467378,
           13467730-13467738
          Length = 456

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +2

Query: 203 ENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSNK 346
           EN   N K NN  V NL  +  ++ L +++    P++   +++EG  K
Sbjct: 209 ENVSGNPKFNNVYVKNLSESTTEDNLKEIFGKFGPITSVVVMREGDGK 256


>10_08_0288 +
           16527666-16527837,16527915-16528132,16528491-16528554,
           16528749-16528821,16529294-16529371,16529573-16529730,
           16530222-16530390,16530531-16530990,16531098-16531478,
           16531834-16532037,16532318-16532451,16532937-16533120
          Length = 764

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 76  ENRVIDRFARTDLSLLDECI-KFKFLNRGVAQFRAEQRIGG 195
           +++ I   ART  +LL EC  K+  +N  +  FRA +RI G
Sbjct: 190 DHKRIQPNART-YALLVECFTKYSMVNEAIRHFRALRRIPG 229


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,921,377
Number of Sequences: 37544
Number of extensions: 155666
Number of successful extensions: 389
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)