Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27g17
(437 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.034
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 28 0.72
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 27 0.96
SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces po... 27 0.96
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 27 1.7
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.7
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 1.7
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 2.9
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 26 2.9
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 26 2.9
SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 3.9
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 5.1
SPBC1347.13c |||ribose methyltransferase|Schizosaccharomyces pom... 25 5.1
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 25 6.7
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 24 8.9
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 24 8.9
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ... 24 8.9
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 24 8.9
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 24 8.9
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.3 bits (70), Expect = 0.034
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +2
Query: 158 PTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANPLER 277
P PV+N SP +PPK + P +S P T A PL R
Sbjct: 972 PLPVSNILSSPTSEPPKDH-PPSAPLSKPVSTSPAAPLAR 1010
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 27.9 bits (59), Expect = 0.72
Identities = 11/42 (26%), Positives = 25/42 (59%)
Frame = -2
Query: 139 LATGLWRVKNVILSKKTVHCNCWLALKNQHNTVHVQPSRGFI 14
LA G++R+ + ++ + T+H ++ LK T++ + GF+
Sbjct: 564 LANGIYRLDDTLVLEGTLHAQYYIDLKRGRVTLNQMSNIGFV 605
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 27.5 bits (58), Expect = 0.96
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +2
Query: 155 LPT---PVANSPLSPVRQPPKSNIKPPTRISLPT 247
LPT P N+P PV P +I+PP ++LPT
Sbjct: 334 LPTSNLPSQNAPARPVE--PSPSIQPPNLLNLPT 365
>SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 380
Score = 27.5 bits (58), Expect = 0.96
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 104 NNIFDAPKTGGKGRVKSLPTPVANSPLSPVRQPPKSNIK 220
N + A KT +GR+ S PV +SP PV K + K
Sbjct: 327 NRLEKASKTIPQGRLDSFFKPVPSSPKKPVDTKSKGSAK 365
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 26.6 bits (56), Expect = 1.7
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = +2
Query: 110 IFDAPKTGGKGRVKSLPTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANP 268
IF AP+ R S P + +P+S PP + P R LP R+ S P
Sbjct: 21 IFGAPRKREPARTVSTPAFMEPAPVSKKPLPPPTRRLP--RKPLPFRSTSLQP 71
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 26.6 bits (56), Expect = 1.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 152 SLPTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSA 262
S+P A S SPV++PP P R++ T + S+
Sbjct: 206 SVPAATAASTASPVKKPPPPAPPKPRRLAARTSSNSS 242
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 26.6 bits (56), Expect = 1.7
Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Frame = +2
Query: 95 FRENNIFD-APKTGGKGRVKSLPTPVANSPLS-PVRQP-PK----SNIK-PPTRISLPTR 250
F E+N F +PK R K+L + L P R P PK S IK PP+R+ LPT
Sbjct: 162 FEEDNFFSVSPK-----RRKNLFEKYGKTDLGKPARVPSPKKSLSSTIKSPPSRVKLPTS 216
Query: 251 TFSANP 268
S +P
Sbjct: 217 ILSKSP 222
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 2.9
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 122 PKTGGKGRVKSLPTPVANSPLSPVRQPP-KSNIKPPTRISLPTRTFSANP 268
P T R P A++P P + PP S++ PP + + P ++ + P
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAP 188
Score = 25.0 bits (52), Expect = 5.1
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 158 PTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANPL 271
PTP + P PP+ +I PP+ S P A P+
Sbjct: 131 PTPQSELR-PPTSAPPRPSIPPPSPASAPPIPSKAPPI 167
Score = 24.2 bits (50), Expect = 8.9
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +2
Query: 152 SLPTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANPLE 274
S P + P SP PP + PP SLP A P++
Sbjct: 142 SAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVK 182
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.8 bits (54), Expect = 2.9
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +2
Query: 98 RENNIFDAPKT-GGKGRVKSLPTPVANSPLSPVRQP 202
+ N +DA +T G +V P P +PL+ + +P
Sbjct: 152 KHNAFYDASQTFGSTAKVAPAPAPSTKTPLANISKP 187
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 25.8 bits (54), Expect = 2.9
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +3
Query: 300 VKNQSSTEKMDILCRPSLVTNWKVCPRT 383
V+N SST K +L PS +T V PRT
Sbjct: 38 VENVSSTPKKGVLEDPSTLTPEVVTPRT 65
>SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 220
Score = 25.4 bits (53), Expect = 3.9
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 179 PLSPVRQPPKSNIKPPTRISLPTRTFSANPL 271
P SP + +S PPT IS+P S+NPL
Sbjct: 67 PFSPSKIMNRSISVPPTNISVP--QISSNPL 95
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.0 bits (52), Expect = 5.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 152 SLPTPVANSPLSPVRQPPKSNIKPPTRISLP 244
S+P+P A SP + PP S+ PP + P
Sbjct: 1039 SVPSPSALSPSVTPQLPPVSSRLPPVSATRP 1069
>SPBC1347.13c |||ribose methyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 25.0 bits (52), Expect = 5.1
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 273 SAASAAAL*VKNQSSTEKMDILCRPSLVTNWKV 371
S ASA AL V N S + + R S++ WKV
Sbjct: 191 SKASAGALEVFNISHVKNPMVFLRNSVLKGWKV 223
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 24.6 bits (51), Expect = 6.7
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Frame = +2
Query: 173 NSPLSPVRQPPKSN--IKPPTRIS 238
N P SP++ PP SN + PP + S
Sbjct: 306 NEPKSPIQLPPVSNLPLNPPIQSS 329
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 24.2 bits (50), Expect = 8.9
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +3
Query: 162 RLSPTRRCRLFVSRQNLTS 218
RLSP RC L R LTS
Sbjct: 73 RLSPVHRCALPTPRMRLTS 91
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 24.2 bits (50), Expect = 8.9
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = +2
Query: 80 TMNRFFRENNIFDAPKTGGKGRVKSLPTPVAN-----SPLSPVRQPPKSNI 217
T + + ++ + AP + + V S P+P PLSP R+PP +++
Sbjct: 572 TKRKLWPQSTLIQAPNSDDEENVPS-PSPKKKVVSPIKPLSPSRRPPLTSL 621
>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 305
Score = 24.2 bits (50), Expect = 8.9
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 128 TGGKGRVKSLPTPVANSPLSPVRQPPKSNIKPPTRIS 238
T K R ++P ++ PLS + P+S + P R S
Sbjct: 183 TPTKRRKNAVPRKSSSPPLSSTKHAPQSTERRPVRRS 219
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 24.2 bits (50), Expect = 8.9
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 152 SLPTPVANSPLSPVRQPPKSNIKPPT 229
S P+P SP V PP SN+ P T
Sbjct: 275 STPSPFGGSP---VMHPPVSNLSPRT 297
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 24.2 bits (50), Expect = 8.9
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2
Query: 70 LALKNQHNTVHVQPSRGFIYEN 5
+ L NQH +H+ P R + EN
Sbjct: 176 IKLINQHIDIHIVPGRPTVLEN 197
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,728,330
Number of Sequences: 5004
Number of extensions: 31763
Number of successful extensions: 131
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -