Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27g15
         (368 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical pr...   175   8e-45
U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal p...   175   8e-45
Z73973-2|CAA98264.1|  277|Caenorhabditis elegans Hypothetical pr...    27   4.2  
Z81575-1|CAB04628.1|  277|Caenorhabditis elegans Hypothetical pr...    27   5.5  
U41540-2|AAK39230.1|  444|Caenorhabditis elegans Suppressor/enha...    27   5.5  
U35660-1|AAA85511.1|  461|Caenorhabditis elegans membrane protei...    27   5.5  
AF171064-1|AAD50991.1|  444|Caenorhabditis elegans presenilin SE...    27   5.5  
AF100307-8|AAC68937.2|  250|Caenorhabditis elegans Hypothetical ...    27   5.5  
U39678-5|ABP49528.1|  213|Caenorhabditis elegans Hypothetical pr...    26   7.3  
U39678-4|AAK39211.2|  330|Caenorhabditis elegans Hypothetical pr...    26   7.3  
AF016425-4|AAB65339.1|  518|Caenorhabditis elegans Hypothetical ...    26   7.3  
AC006677-5|AAF39950.1|  280|Caenorhabditis elegans Hypothetical ...    26   7.3  
Z93379-9|CAE11301.1|  354|Caenorhabditis elegans Hypothetical pr...    26   9.7  
U70846-2|ABI18146.1|  647|Caenorhabditis elegans Hypothetical pr...    26   9.7  
U70846-1|AAB09104.4|  510|Caenorhabditis elegans Hypothetical pr...    26   9.7  

>Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical
           protein M01F1.2 protein.
          Length = 202

 Score =  175 bits (426), Expect = 8e-45
 Identities = 76/112 (67%), Positives = 94/112 (83%)
 Frame = +2

Query: 29  GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRK 208
           G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK MSFLRK
Sbjct: 2   GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61

Query: 209 RCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPF 364
           RCN+NPARG FH+RAP KI W+TVRGM+PHKT RG  AL+ LR Y+G P  +
Sbjct: 62  RCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKY 113


>U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal
           protein L13A protein.
          Length = 202

 Score =  175 bits (426), Expect = 8e-45
 Identities = 76/112 (67%), Positives = 94/112 (83%)
 Frame = +2

Query: 29  GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRK 208
           G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK MSFLRK
Sbjct: 2   GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61

Query: 209 RCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPF 364
           RCN+NPARG FH+RAP KI W+TVRGM+PHKT RG  AL+ LR Y+G P  +
Sbjct: 62  RCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKY 113


>Z73973-2|CAA98264.1|  277|Caenorhabditis elegans Hypothetical
          protein F25D1.5 protein.
          Length = 277

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 23 MTGFSNKAIVIDGRGHLLGRLAAVI 97
          M  FS K+++I G  + +GR AAVI
Sbjct: 1  MARFSGKSVIITGSSNGIGRSAAVI 25


>Z81575-1|CAB04628.1|  277|Caenorhabditis elegans Hypothetical
          protein R08H2.1 protein.
          Length = 277

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 23 MTGFSNKAIVIDGRGHLLGRLAAVI 97
          M  FS K+I+I G    +GR AAVI
Sbjct: 1  MARFSGKSIIITGSSSGIGRSAAVI 25


>U41540-2|AAK39230.1|  444|Caenorhabditis elegans
           Suppressor/enhancer of lin-12 protein12 protein.
          Length = 444

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -3

Query: 342 YVRSLLRAF-LPRSVLCGIIPLTVFHRILDGALKWKGPRAGFTLHLLRRNDISLSLFLKK 166
           YV+ +L++F +  S L  +  L  +  +    + WKGP      +L+  + +   +F+K 
Sbjct: 150 YVQEVLKSFDVSPSALLVLFGLGNYGVLGMMCIHWKGPLRLQQFYLITMSALMALVFIKY 209

Query: 165 LPE 157
           LPE
Sbjct: 210 LPE 212


>U35660-1|AAA85511.1|  461|Caenorhabditis elegans membrane protein
           protein.
          Length = 461

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -3

Query: 342 YVRSLLRAF-LPRSVLCGIIPLTVFHRILDGALKWKGPRAGFTLHLLRRNDISLSLFLKK 166
           YV+ +L++F +  S L  +  L  +  +    + WKGP      +L+  + +   +F+K 
Sbjct: 150 YVQEVLKSFDVSPSALLVLFGLGNYGVLGMMCIHWKGPLRLQQFYLITMSALMALVFIKY 209

Query: 165 LPE 157
           LPE
Sbjct: 210 LPE 212


>AF171064-1|AAD50991.1|  444|Caenorhabditis elegans presenilin
           SEL-12 protein.
          Length = 444

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -3

Query: 342 YVRSLLRAF-LPRSVLCGIIPLTVFHRILDGALKWKGPRAGFTLHLLRRNDISLSLFLKK 166
           YV+ +L++F +  S L  +  L  +  +    + WKGP      +L+  + +   +F+K 
Sbjct: 150 YVQEVLKSFDVSPSALLVLFGLGNYGVLGMMCIHWKGPLRLQQFYLITMSALMALVFIKY 209

Query: 165 LPE 157
           LPE
Sbjct: 210 LPE 212


>AF100307-8|AAC68937.2|  250|Caenorhabditis elegans Hypothetical
           protein T12B5.13 protein.
          Length = 250

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 146 QINISGNFFRNKLKLM-SFLRKRCNVNPARGPFHF 247
           Q + S NFF+NK K++ +FL+K+      +  FHF
Sbjct: 93  QCDKSNNFFKNKNKIIYAFLQKKSFQKHRQLMFHF 127


>U39678-5|ABP49528.1|  213|Caenorhabditis elegans Hypothetical
           protein C39D10.3b protein.
          Length = 213

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 166 VARDIDLFAANHNNFVPFEKDLGD 95
           V+   DLF A H +F+   KDLGD
Sbjct: 64  VSGAFDLFHAGHLSFLEAAKDLGD 87


>U39678-4|AAK39211.2|  330|Caenorhabditis elegans Hypothetical
           protein C39D10.3a protein.
          Length = 330

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 166 VARDIDLFAANHNNFVPFEKDLGD 95
           V+   DLF A H +F+   KDLGD
Sbjct: 181 VSGAFDLFHAGHLSFLEAAKDLGD 204


>AF016425-4|AAB65339.1|  518|Caenorhabditis elegans Hypothetical
           protein F59A7.8 protein.
          Length = 518

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 69  ICWAVWRQSSPRS 107
           +CW +WR+S P S
Sbjct: 152 LCWLLWRESQPHS 164


>AC006677-5|AAF39950.1|  280|Caenorhabditis elegans Hypothetical
          protein R05D8.7 protein.
          Length = 280

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 23 MTGFSNKAIVIDGRGHLLGRLAAVI 97
          M  FSNK ++I G  + +GR  A++
Sbjct: 1  MPRFSNKTVIITGSSNGIGRTTAIL 25


>Z93379-9|CAE11301.1|  354|Caenorhabditis elegans Hypothetical
           protein F21H7.14 protein.
          Length = 354

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = -3

Query: 270 HRILDGALKWKGPRAGFTLHLL--RRNDISLSLFLKKLPEILICSQRTTTTLFP 115
           H +L    + +  +     H L    N ISL+LFL  +P     ++R   T++P
Sbjct: 135 HSLLQNKFRIQSTKRRIIYHFLIFLSNGISLTLFLINVPSNQKTAKREALTMYP 188


>U70846-2|ABI18146.1|  647|Caenorhabditis elegans Hypothetical
           protein D1073.1b protein.
          Length = 647

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 128 VVVRCEQINISGNFFRNKLKLMSFLRKR 211
           ++V C  I +S   F ++LKL SFLR++
Sbjct: 194 LIVICLLIVVSALAFYHRLKLQSFLREK 221


>U70846-1|AAB09104.4|  510|Caenorhabditis elegans Hypothetical
           protein D1073.1a protein.
          Length = 510

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 128 VVVRCEQINISGNFFRNKLKLMSFLRKR 211
           ++V C  I +S   F ++LKL SFLR++
Sbjct: 194 LIVICLLIVVSALAFYHRLKLQSFLREK 221


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,153,843
Number of Sequences: 27780
Number of extensions: 184113
Number of successful extensions: 452
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)