Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27g08
         (487 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    27   2.0  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    25   6.1  
SPAC4F10.18 |||WD repeat protein, human NUP37 family|Schizosacch...    25   8.0  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    25   8.0  
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    25   8.0  

>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +2

Query: 164 DVDGRLLLYSSCRSAGGSTI**EKSASFYRRLRH*SGKR 280
           D+D R  LYS+   +GGST+       F   LR  SGK+
Sbjct: 291 DIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKK 329


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 148 HTLKTRPQSDSFGPHSLQPIL 86
           H+    PQS+S  P+S+ P+L
Sbjct: 454 HSSSATPQSESSSPNSVSPLL 474


>SPAC4F10.18 |||WD repeat protein, human NUP37
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 36  WSIFSIKDFNYLAQKLYKMGCKLCGPKLSLCGLVLSVWG 152
           W++F+  D+N ++    K+G K   P +    L  S+ G
Sbjct: 280 WNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLG 318


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1151

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 98   QTMWTKTVALWPSFERM 148
            ++MW KTV ++PS + +
Sbjct: 994  ESMWNKTVTMFPSLQEL 1010


>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -3

Query: 350 SRYN*CNQVQQCRNPTILCIQGISFFHFNDE 258
           SRYN C   +   +P     +G  F  F DE
Sbjct: 208 SRYNSCKSAKIMTDPQTNVSRGYGFVRFTDE 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,038,560
Number of Sequences: 5004
Number of extensions: 40550
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)