Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27g07
         (459 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces po...    28   0.79 
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ...    26   2.4  
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    26   2.4  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    26   3.2  
SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces pombe...    24   9.7  
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    24   9.7  

>SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 333

 Score = 27.9 bits (59), Expect = 0.79
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 319 ENVIIGYKGYYQAYAYNGGSLDPNTRVEXSMKTL 420
           ENVI   +G  +   +    +DPN  +E +MKTL
Sbjct: 105 ENVIAHLRGTKKLDLFQCARVDPNVPIETTMKTL 138


>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 267

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -2

Query: 425 TVSVFMDXSTRVLGSSEPPLYAYAW 351
           T  ++M+ ++ + G+S PP Y Y +
Sbjct: 194 TTPLYMERASYLFGASNPPAYTYTY 218


>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +1

Query: 244 NLDITPPKETLQKDVEITIVETDYXENVIIGYKGYYQAYAYNGGSLDPNTR 396
           N+  TP  ET+ + ++   +  D  E+ +     +   Y+Y GG L+ N R
Sbjct: 127 NIIPTPANETVPR-IKQPSIALDSLESPVSAPSRHQSTYSYKGGPLNYNLR 176


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 291 NHHRGDGLXRKRDYWLQGVL 350
           N H+G G+  K D W  GVL
Sbjct: 223 NVHKGFGIDEKSDIWALGVL 242


>SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 270

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 97  LLVALRHLIYPTAIWPRDTRHVV 29
           L  AL+ +  PTA+W  D   V+
Sbjct: 168 LFAALKTVKLPTAVWDEDLERVI 190


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 436 LLCPQSAFSWIXRRVCWDPAS 374
           LLCP S+  W+ + +  D A+
Sbjct: 138 LLCPLSSLEWVSKLILMDNAN 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,770,037
Number of Sequences: 5004
Number of extensions: 30205
Number of successful extensions: 75
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)