Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27g07
(459 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1454 - 33715782-33715797,33715887-33715918,33716582-33716920 29 1.4
03_05_0421 + 24065725-24066052,24066811-24067040 29 1.8
06_02_0035 + 10816723-10819497,10819964-10820011 29 2.4
06_01_0330 + 2393882-2394313,2394350-2394610,2394679-2395407 28 3.1
12_01_0203 + 1520079-1520302,1522346-1522405,1522794-1523016,152... 28 4.2
05_03_0080 - 8245082-8246656,8246657-8246935,8247502-8247513 28 4.2
07_03_1124 + 24157441-24157483,24157989-24158020,24158135-241583... 27 5.5
01_07_0109 - 41131714-41132988 27 5.5
01_06_1651 + 38909410-38909625,38909713-38910181,38910265-38910899 27 5.5
07_03_1386 - 26192019-26192073,26192272-26192397,26192570-261926... 27 7.3
07_02_0025 - 11939976-11940158,11941166-11941378,11943191-119433... 27 9.6
04_01_0120 + 1241241-1241321,1242827-1242857,1242999-1243612,124... 27 9.6
>04_04_1454 - 33715782-33715797,33715887-33715918,33716582-33716920
Length = 128
Score = 29.5 bits (63), Expect = 1.4
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = -3
Query: 214 ARCSAPPQRQNAPPPKARIKQ*RLPSRLCVSYRSL--GMTDLLVALRHLIYPTAIWPRD 44
AR PP RQ PP+A + +P + Y SL D L +LR + + W R+
Sbjct: 65 ARAVPPPPRQQGEPPRAEALRRLVPGGAGMEYSSLLEETADYLRSLRAQVRLLSDWGRN 123
>03_05_0421 + 24065725-24066052,24066811-24067040
Length = 185
Score = 29.1 bits (62), Expect = 1.8
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +3
Query: 246 LGHYPAQG-NAAKGRGNH-HRGDGLXRKRDYWLQGVLPGVCVQRRLAGSQHTR 398
+G +P+ G GRG HRG+ L R R + PG V RR A + R
Sbjct: 1 MGDWPSAGARLGDGRGEAGHRGEALARARPAIRKRRRPGALVNRRRATPRFAR 53
>06_02_0035 + 10816723-10819497,10819964-10820011
Length = 940
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +3
Query: 252 HYPAQGNAAKGRGNHHR-GDGLXRKRDYW 335
H +G AA G HHR GD + ++ YW
Sbjct: 242 HAAEEGGAAAAAGGHHRAGDPVLQEGHYW 270
>06_01_0330 + 2393882-2394313,2394350-2394610,2394679-2395407
Length = 473
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +1
Query: 298 IVETDYXENVIIGYKGYYQAYAYNGGSLDPNTRVEXSMKT 417
+VE + +N+ + + + Y+GGSL P V+ S+++
Sbjct: 31 VVELSFLDNLQVSKAAIQRLFFYDGGSLPPFESVDRSLQS 70
>12_01_0203 +
1520079-1520302,1522346-1522405,1522794-1523016,
1523038-1523434,1523522-1523781,1523866-1524011,
1524044-1524317,1524501-1525547
Length = 876
Score = 27.9 bits (59), Expect = 4.2
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Frame = -3
Query: 109 GMTDLL-VALRHLIY---PTAIWPRDTRHVVKLIIL 14
G DLL V L HL Y P +WP+D R + KL L
Sbjct: 522 GKPDLLDVDLHHLSYVKAPGKVWPKDARPLRKLRFL 557
>05_03_0080 - 8245082-8246656,8246657-8246935,8247502-8247513
Length = 621
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 301 VETDYXENVIIGYKG-YYQAYAYNGGSLDPNTRVEXSMKTL 420
V +DY + Y Y Y GG LDP+ R++ +K L
Sbjct: 477 VSSDYAVMEHLNYMAKLVDMYKYAGGKLDPHARMDLLLKAL 517
>07_03_1124 +
24157441-24157483,24157989-24158020,24158135-24158353,
24158553-24158634,24158726-24158898
Length = 182
Score = 27.5 bits (58), Expect = 5.5
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -3
Query: 205 SAPPQRQNAPPPK-ARIKQ*RLPSRLCVSYRSLGMTDLLVALRHLIYPTAIWPRDTR 38
+A P APPP A + S +C+S+ ++GM L++ L HL T +W + R
Sbjct: 53 TATPHGYGAPPPSPAGLATFMGVSFMCLSFVTVGMVHLVLVL-HL---TMLWHMEER 105
>01_07_0109 - 41131714-41132988
Length = 424
Score = 27.5 bits (58), Expect = 5.5
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = -3
Query: 220 SFARCSAPPQRQNAPPPKARIKQ*RLPSRLCVSYRSLGMTDL 95
+FAR +A +R PPP A P LC R LG T L
Sbjct: 294 AFARATAGRKRVTPPPPPA------APFELCYDSRDLGSTRL 329
>01_06_1651 + 38909410-38909625,38909713-38910181,38910265-38910899
Length = 439
Score = 27.5 bits (58), Expect = 5.5
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Frame = +3
Query: 252 HYPAQGNAAKGRGNHHRGDGLXRKRDYW--LQGVLPGVCVQRRLAGSQHTRR 401
HY + G GN G L ++ D W + G+ GVC L + RR
Sbjct: 387 HYVGRAAVVLGVGNVFYGMSLAKEGDEWSYVYGIFVGVCAVAYLVLEEWRRR 438
>07_03_1386 -
26192019-26192073,26192272-26192397,26192570-26192622,
26192722-26192807,26192896-26193017,26193096-26193155,
26193787-26193866,26193949-26194087,26194273-26194367,
26194792-26194860,26195015-26195131,26195839-26195913,
26196590-26196961
Length = 482
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 259 PPKETLQKDVEITIVETDYXENVIIGYKGYYQAY 360
PP T + D EI +E D+ + VIIG ++ Y
Sbjct: 162 PPPLTNKADWEINPLELDFSKAVIIGKDDLFRCY 195
>07_02_0025 -
11939976-11940158,11941166-11941378,11943191-11943323,
11943522-11943741,11944083-11944182,11944526-11944659,
11944781-11944949
Length = 383
Score = 26.6 bits (56), Expect = 9.6
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +1
Query: 247 LDITPPKETLQKDVEITIVETDYXENVIIGYKGYYQAYAYNGGSLD 384
LDI + L KD TI+ D I G + +++NGG+ D
Sbjct: 152 LDIASGLQYLHKDSRHTIIHRDLKVVAKISDFGIARLFSHNGGNQD 197
>04_01_0120 +
1241241-1241321,1242827-1242857,1242999-1243612,
1243726-1243796,1244233-1244478,1245267-1245393,
1245993-1246185,1246656-1247209
Length = 638
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 325 VIIGYKGYYQAYAYNGGSLDPNTRVEXSMKTLTVGK 432
V++ Y+ Y+ Y Y D +V+ S+ T+GK
Sbjct: 332 VVVDYEIAYRIYQYYTNENDGTAKVKISLTQTTIGK 367
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,042,752
Number of Sequences: 37544
Number of extensions: 219418
Number of successful extensions: 707
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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