Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27g07
(459 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U52001-1|AAA96093.1| 656|Caenorhabditis elegans Feminization of... 32 0.23
J03172-1|AAA28055.1| 656|Caenorhabditis elegans protein ( C.ele... 32 0.23
U41542-10|AAX88836.1| 486|Caenorhabditis elegans Nuclear hormon... 31 0.53
U41542-9|AAK39150.3| 542|Caenorhabditis elegans Nuclear hormone... 31 0.53
AY305836-1|AAR11981.1| 487|Caenorhabditis elegans nuclear recep... 31 0.53
AF273781-1|AAG15130.1| 508|Caenorhabditis elegans nuclear recep... 31 0.53
AC024790-2|AAF60638.1| 220|Caenorhabditis elegans Ground-like (... 30 0.93
L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein. 28 2.8
AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical... 28 2.8
S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein. 27 5.0
M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protei... 27 5.0
AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer :... 27 5.0
Z81031-8|CAJ55248.1| 363|Caenorhabditis elegans Hypothetical pr... 27 6.6
Z69903-8|CAD56585.3| 363|Caenorhabditis elegans Hypothetical pr... 27 6.6
Z69903-5|CAH60762.2| 497|Caenorhabditis elegans Hypothetical pr... 27 6.6
Z69903-4|CAA93775.3| 479|Caenorhabditis elegans Hypothetical pr... 27 6.6
Z69903-3|CAI79241.1| 480|Caenorhabditis elegans Hypothetical pr... 27 6.6
Z35663-11|CAA84732.2| 791|Caenorhabditis elegans Hypothetical p... 27 6.6
U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical pr... 27 6.6
AY836558-1|AAW21316.1| 479|Caenorhabditis elegans casein kinase... 27 6.6
AY836557-1|AAW21315.1| 297|Caenorhabditis elegans casein kinase... 27 6.6
AY836556-1|AAW21314.1| 479|Caenorhabditis elegans casein kinase... 27 6.6
Z75548-1|CAA99911.1| 776|Caenorhabditis elegans Hypothetical pr... 27 8.7
>U52001-1|AAA96093.1| 656|Caenorhabditis elegans Feminization of xx
and xo animalsprotein 1, isoform a protein.
Length = 656
Score = 31.9 bits (69), Expect = 0.23
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +3
Query: 291 NHHRGDGLXRKRDYWLQGVLPGVCVQRRLAGSQHTRRXIHENADCGQRRFAH 446
NHH L R R W++ V GVC++ A + + + CG+ R H
Sbjct: 408 NHHANRNL-RVRSSWVKYVFNGVCLELERAAAWTGAPLLEDTECCGKERCQH 458
>J03172-1|AAA28055.1| 656|Caenorhabditis elegans protein (
C.elegans fem-1 gene,complete cds. ).
Length = 656
Score = 31.9 bits (69), Expect = 0.23
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +3
Query: 291 NHHRGDGLXRKRDYWLQGVLPGVCVQRRLAGSQHTRRXIHENADCGQRRFAH 446
NHH L R R W++ V GVC++ A + + + CG+ R H
Sbjct: 408 NHHANRNL-RVRSSWVKYVFNGVCLELERAAAWTGAPLLEDTECCGKERCQH 458
>U41542-10|AAX88836.1| 486|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 35, isoform b protein.
Length = 486
Score = 30.7 bits (66), Expect = 0.53
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = -3
Query: 133 LCVSYRSLGMTDLLVALRHLIYPTAIWPRDTRHVVKLIILSFYL 2
LCV+YRS+G D L L L P A + T H +K + FYL
Sbjct: 224 LCVAYRSVGANDALKLLNDLYIPRA--SKTTPH-LKEYVDGFYL 264
>U41542-9|AAK39150.3| 542|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 35, isoform a protein.
Length = 542
Score = 30.7 bits (66), Expect = 0.53
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = -3
Query: 133 LCVSYRSLGMTDLLVALRHLIYPTAIWPRDTRHVVKLIILSFYL 2
LCV+YRS+G D L L L P A + T H +K + FYL
Sbjct: 280 LCVAYRSVGANDALKLLNDLYIPRA--SKTTPH-LKEYVDGFYL 320
>AY305836-1|AAR11981.1| 487|Caenorhabditis elegans nuclear receptor
NHR-35 protein.
Length = 487
Score = 30.7 bits (66), Expect = 0.53
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = -3
Query: 133 LCVSYRSLGMTDLLVALRHLIYPTAIWPRDTRHVVKLIILSFYL 2
LCV+YRS+G D L L L P A + T H +K + FYL
Sbjct: 225 LCVAYRSVGANDALKLLNDLYIPRA--SKTTPH-LKEYVDGFYL 265
>AF273781-1|AAG15130.1| 508|Caenorhabditis elegans nuclear receptor
NHR-35 protein.
Length = 508
Score = 30.7 bits (66), Expect = 0.53
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = -3
Query: 133 LCVSYRSLGMTDLLVALRHLIYPTAIWPRDTRHVVKLIILSFYL 2
LCV+YRS+G D L L L P A + T H +K + FYL
Sbjct: 246 LCVAYRSVGANDALKLLNDLYIPRA--SKTTPH-LKEYVDGFYL 286
>AC024790-2|AAF60638.1| 220|Caenorhabditis elegans Ground-like (grd
related) protein 5 protein.
Length = 220
Score = 29.9 bits (64), Expect = 0.93
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = -3
Query: 238 FCTDPFSFARCSAPPQRQNAPPPKA 164
F P FA SAPPQ APPP+A
Sbjct: 86 FAAQPAQFAVQSAPPQPIVAPPPQA 110
>L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.
Length = 2553
Score = 28.3 bits (60), Expect = 2.8
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +1
Query: 262 PKETLQKDVEITIVETDYXENVIIGYKGYYQA 357
P++ +Q++ + IVET++ +N+II KG A
Sbjct: 2346 PRQIVQENTQ-EIVETEFDDNIIISAKGILHA 2376
>AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical
protein Y71G12B.11a protein.
Length = 2553
Score = 28.3 bits (60), Expect = 2.8
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +1
Query: 262 PKETLQKDVEITIVETDYXENVIIGYKGYYQA 357
P++ +Q++ + IVET++ +N+II KG A
Sbjct: 2346 PRQIVQENTQ-EIVETEFDDNIIISAKGILHA 2376
>S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.
Length = 1475
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -3
Query: 229 DPFSFARCSAPPQRQNAPPPKARIKQ 152
D FS R S+PP R APPPK K+
Sbjct: 1132 DEFSIKR-SSPPCRYYAPPPKYSCKK 1156
>M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protein
protein.
Length = 1475
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -3
Query: 229 DPFSFARCSAPPQRQNAPPPKARIKQ 152
D FS R S+PP R APPPK K+
Sbjct: 1132 DEFSIKR-SSPPCRYYAPPPKYSCKK 1156
>AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer : xx
animals transformedinto males protein 2, isoform a
protein.
Length = 1475
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -3
Query: 229 DPFSFARCSAPPQRQNAPPPKARIKQ 152
D FS R S+PP R APPPK K+
Sbjct: 1132 DEFSIKR-SSPPCRYYAPPPKYSCKK 1156
>Z81031-8|CAJ55248.1| 363|Caenorhabditis elegans Hypothetical
protein F46F2.2b protein.
Length = 363
Score = 27.1 bits (57), Expect = 6.6
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 300 DGDFHVLLQRFLGRGNVQVFNFVRTRFHL 214
+GD++V++ LG +FNF + +F L
Sbjct: 140 EGDYNVMVMELLGPSLEDLFNFCQRKFSL 168
>Z69903-8|CAD56585.3| 363|Caenorhabditis elegans Hypothetical
protein F46F2.2b protein.
Length = 363
Score = 27.1 bits (57), Expect = 6.6
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 300 DGDFHVLLQRFLGRGNVQVFNFVRTRFHL 214
+GD++V++ LG +FNF + +F L
Sbjct: 140 EGDYNVMVMELLGPSLEDLFNFCQRKFSL 168
>Z69903-5|CAH60762.2| 497|Caenorhabditis elegans Hypothetical
protein F46F2.2c protein.
Length = 497
Score = 27.1 bits (57), Expect = 6.6
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 300 DGDFHVLLQRFLGRGNVQVFNFVRTRFHL 214
+GD++V++ LG +FNF + +F L
Sbjct: 256 EGDYNVMVMELLGPSLEDLFNFCQRKFSL 284
>Z69903-4|CAA93775.3| 479|Caenorhabditis elegans Hypothetical
protein F46F2.2a protein.
Length = 479
Score = 27.1 bits (57), Expect = 6.6
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 300 DGDFHVLLQRFLGRGNVQVFNFVRTRFHL 214
+GD++V++ LG +FNF + +F L
Sbjct: 256 EGDYNVMVMELLGPSLEDLFNFCQRKFSL 284
>Z69903-3|CAI79241.1| 480|Caenorhabditis elegans Hypothetical
protein F46F2.2d protein.
Length = 480
Score = 27.1 bits (57), Expect = 6.6
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 300 DGDFHVLLQRFLGRGNVQVFNFVRTRFHL 214
+GD++V++ LG +FNF + +F L
Sbjct: 256 EGDYNVMVMELLGPSLEDLFNFCQRKFSL 284
>Z35663-11|CAA84732.2| 791|Caenorhabditis elegans Hypothetical
protein T04A8.13 protein.
Length = 791
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -3
Query: 199 PPQRQNAPPPKARIKQ*RLPSRLCVSYRSLGMTDLLVAL 83
PP RQN PPP R + + CV + T V++
Sbjct: 205 PPPRQNIPPPTPRRPPPKKKNACCVDISTFQETSFPVSV 243
>U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical
protein F45E4.4 protein.
Length = 2361
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 253 ITPPKETLQKDVEITIVETDYXENV 327
I PP +QKD+E+++ E D+ +
Sbjct: 491 IVPPPSIIQKDIELSMEEMDHIARI 515
>AY836558-1|AAW21316.1| 479|Caenorhabditis elegans casein kinase I
epsilon/delta kin-20C protein.
Length = 479
Score = 27.1 bits (57), Expect = 6.6
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 300 DGDFHVLLQRFLGRGNVQVFNFVRTRFHL 214
+GD++V++ LG +FNF + +F L
Sbjct: 256 EGDYNVMVMELLGPSLEDLFNFCQRKFSL 284
>AY836557-1|AAW21315.1| 297|Caenorhabditis elegans casein kinase I
epsilon/delta kin-20B protein.
Length = 297
Score = 27.1 bits (57), Expect = 6.6
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 300 DGDFHVLLQRFLGRGNVQVFNFVRTRFHL 214
+GD++V++ LG +FNF + +F L
Sbjct: 74 EGDYNVMVMELLGPSLEDLFNFCQRKFSL 102
>AY836556-1|AAW21314.1| 479|Caenorhabditis elegans casein kinase I
epsilon/delta kin-20A protein.
Length = 479
Score = 27.1 bits (57), Expect = 6.6
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 300 DGDFHVLLQRFLGRGNVQVFNFVRTRFHL 214
+GD++V++ LG +FNF + +F L
Sbjct: 256 EGDYNVMVMELLGPSLEDLFNFCQRKFSL 284
>Z75548-1|CAA99911.1| 776|Caenorhabditis elegans Hypothetical
protein R90.1 protein.
Length = 776
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 366 QRRLAGSQHTRRXIHENADCG 428
QRRL+ S+ R IH A CG
Sbjct: 571 QRRLSRSEKDRSGIHRTASCG 591
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,988,853
Number of Sequences: 27780
Number of extensions: 180684
Number of successful extensions: 527
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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