Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27g02
         (495 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-539|ABI30967.1|  604|Drosophila melanogaster CG32792-PD...    32   0.49 
AY069235-1|AAL39380.1|  437|Drosophila melanogaster GH28017p pro...    28   6.0  
AJ309005-1|CAC35209.1| 2382|Drosophila melanogaster GRAAL2 prote...    28   6.0  
AE014296-1582|AAF50322.2|  563|Drosophila melanogaster CG4821-PC...    28   6.0  
AE014296-1580|AAF50319.3| 2786|Drosophila melanogaster CG4821-PA...    28   6.0  
AY052127-1|AAK93551.1| 1062|Drosophila melanogaster SD07741p pro...    28   8.0  

>AE014298-539|ABI30967.1|  604|Drosophila melanogaster CG32792-PD
           protein.
          Length = 604

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = +2

Query: 200 TVCSLHKVACASRFRSMTCIFSSAVLKP*VPYTFDPSFGFFRY 328
           T+C LHK  C    R  T I   + L   +P  FD SF    Y
Sbjct: 398 TICPLHKRECVELIRFRTIIAMESCLDECLPSCFDLSFSAIAY 440


>AY069235-1|AAL39380.1|  437|Drosophila melanogaster GH28017p
           protein.
          Length = 437

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -1

Query: 408 LRCPIP-SGRGTTCPRGFHFLGCSSVNLYRKNPKLGSKVY 292
           LRC I    +   CPRG  F G SSV +Y  +P+  S  +
Sbjct: 107 LRCGIGVKPQVEQCPRGHIFDGSSSVCVYSDSPRTSSSSF 146


>AJ309005-1|CAC35209.1| 2382|Drosophila melanogaster GRAAL2 protein
           protein.
          Length = 2382

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -1

Query: 408 LRCPIP-SGRGTTCPRGFHFLGCSSVNLYRKNPKLGSKVY 292
           LRC I    +   CPRG  F G SSV +Y  +P+  S  +
Sbjct: 233 LRCGIGVKPQVEQCPRGHIFDGSSSVCVYSDSPRTSSSSF 272


>AE014296-1582|AAF50322.2|  563|Drosophila melanogaster CG4821-PC,
           isoform C protein.
          Length = 563

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -1

Query: 408 LRCPIP-SGRGTTCPRGFHFLGCSSVNLYRKNPKLGSKVY 292
           LRC I    +   CPRG  F G SSV +Y  +P+  S  +
Sbjct: 233 LRCGIGVKPQVEQCPRGHIFDGSSSVCVYSDSPRTSSSSF 272


>AE014296-1580|AAF50319.3| 2786|Drosophila melanogaster CG4821-PA,
           isoform A protein.
          Length = 2786

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -1

Query: 408 LRCPIP-SGRGTTCPRGFHFLGCSSVNLYRKNPKLGSKVY 292
           LRC I    +   CPRG  F G SSV +Y  +P+  S  +
Sbjct: 233 LRCGIGVKPQVEQCPRGHIFDGSSSVCVYSDSPRTSSSSF 272


>AY052127-1|AAK93551.1| 1062|Drosophila melanogaster SD07741p
           protein.
          Length = 1062

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
 Frame = +1

Query: 1   ESQRNREPKRHDNRPLRVQKIRKIVKSAQII-VKVVSKEAEGDEE--RSRENRVTRRPLG 171
           + QR+RE +R   R L   K R+ +K  Q    +  SKE +  +E  RSRE + +R PL 
Sbjct: 555 DRQRSRERRRSKERQL--SKDRQGLKERQRSNERKRSKERQPSKEKQRSRERQRSREPLQ 612

Query: 172 QKLLQKNPKNR 204
            K  Q++ + +
Sbjct: 613 SKDRQRSKERQ 623


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,123,011
Number of Sequences: 53049
Number of extensions: 471184
Number of successful extensions: 1148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1148
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1742533632
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)