Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27f20
         (416 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    24   0.79 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.4  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          20   9.7  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      20   9.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    20   9.7  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    20   9.7  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    20   9.7  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.8 bits (49), Expect = 0.79
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 201 ESNDKLPATIEECHKQIESLTNEVNSIKEQF 293
           +S D+L   + + + ++  LTN VN +K  F
Sbjct: 479 DSVDRLDNLMAQVNTEMTHLTNAVNKLKTSF 509


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 369 EDAKSFAIQSFCKDLL 416
           E  K+F  + +C DLL
Sbjct: 452 ETTKTFCCKGYCMDLL 467


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 80  SLYXWENSKILGGYHAETKS 139
           S Y   NS+I GGY  + +S
Sbjct: 627 SEYNQYNSRIWGGYKFDKRS 646


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 80  SLYXWENSKILGGYHAETKS 139
           S Y   NS+I GGY  + +S
Sbjct: 627 SEYNQYNSRIWGGYKFDKRS 646


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 210 DKLPATIEECHKQIESLTNEV 272
           +K P  ++EC    ES T+ V
Sbjct: 147 EKFPFDVQECPLIFESWTHNV 167


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +3

Query: 219 PATIEECHKQIESLTNEVNSIKEQFND 299
           P   + CH +IES    +  I+ ++N+
Sbjct: 146 PMDRQLCHIEIESFGYTMRDIRYKWNE 172


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +3

Query: 219 PATIEECHKQIESLTNEVNSIKEQFND 299
           P   + CH +IES    +  I+ ++N+
Sbjct: 85  PMDRQLCHIEIESFGYTMRDIRYKWNE 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,929
Number of Sequences: 438
Number of extensions: 1629
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)