Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27f19
         (364 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58754-6|AAK72081.1|  325|Caenorhabditis elegans Serpentine rece...    28   1.7  
Z82286-2|CAB05306.1|  397|Caenorhabditis elegans Hypothetical pr...    26   7.0  
U58754-8|AAK72082.1|  325|Caenorhabditis elegans Serpentine rece...    26   9.3  

>U58754-6|AAK72081.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 12 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -3

Query: 338 YIVTIPRHSVCFSSLISFTQRPKKICQCFVCIYI-RRKI 225
           ++VT  ++ +CFS+L +       I   +VCI I RRKI
Sbjct: 172 HVVTGTKNILCFSALYTILHMTIPITPVYVCILILRRKI 210


>Z82286-2|CAB05306.1|  397|Caenorhabditis elegans Hypothetical
           protein W02A2.3 protein.
          Length = 397

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 260 QCFVCIYIRRKIHRF 216
           QC VC Y R+K  RF
Sbjct: 383 QCMVCCYFRKKARRF 397


>U58754-8|AAK72082.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 13 protein.
          Length = 325

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 320 RHSVCFSSLISFTQRPKKICQCFVCIYI-RRKI 225
           ++ +CFS+L +       I   ++CI I RRKI
Sbjct: 178 KNIICFSALFTILHMTLPITPVYICILILRRKI 210


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,020,837
Number of Sequences: 27780
Number of extensions: 65815
Number of successful extensions: 160
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)