Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27f18
(423 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 28 0.52
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 28 0.52
SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz... 28 0.69
SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar... 25 3.7
SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|ch... 25 4.8
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c... 25 4.8
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 25 4.8
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 25 6.4
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 28.3 bits (60), Expect = 0.52
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = +2
Query: 200 NCKDAVSRHVDKKYKYTYSESGARLPPSAPNSVAKQGDPLYLQPHTVLITKSGVIQLIMK 379
N K VS+ +K+ K+ Y E + S + V K + L P + TK+G+ Q+I++
Sbjct: 646 NKKRKVSQKREKQKKFLYDEPTFKKEASPHSDVLKNLHFVVLPPTELHETKAGLQQIIIE 705
Query: 380 S 382
+
Sbjct: 706 N 706
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 28.3 bits (60), Expect = 0.52
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 341 LITKSGVIQLIMKSKLPYAIELQEM 415
L+ K GV+ L+ K KLP+++ ++M
Sbjct: 542 LLVKDGVVHLVDKVKLPFSVSQKDM 566
>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 499
Score = 27.9 bits (59), Expect = 0.69
Identities = 14/65 (21%), Positives = 29/65 (44%)
Frame = +2
Query: 191 KYGNCKDAVSRHVDKKYKYTYSESGARLPPSAPNSVAKQGDPLYLQPHTVLITKSGVIQL 370
KY CK +S +Y + +S +P +AP+ + + P + L+ + +L
Sbjct: 172 KYAGCKIDISTFEQSRYPRVFVDSQLPVPKAAPSPIEEWYPPGHGDIFDALVHSGTIERL 231
Query: 371 IMKSK 385
+ + K
Sbjct: 232 LAQGK 236
>SPAC23H4.09 |cdb4||curved DNA-binding protein
Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 25.4 bits (53), Expect = 3.7
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 209 DAVSRHVDKKYKYTYSESGARLPPS-APNSVAKQGDPLYLQPHTVLITKSG-VIQLIM 376
+ ++ + K Y+ + G P + +PN +A PL P L KSG V+++++
Sbjct: 58 ELLNEAIKKVYRTKDAYKGIAFPTAVSPNDMAAHLSPLKSDPEANLALKSGDVVKILL 115
>SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 234
Score = 25.0 bits (52), Expect = 4.8
Identities = 11/40 (27%), Positives = 18/40 (45%)
Frame = +2
Query: 182 SSLKYGNCKDAVSRHVDKKYKYTYSESGARLPPSAPNSVA 301
+++ Y +C A RH SE+G P S N ++
Sbjct: 154 TAVPYDSCLPAPDRHTPSSASSRASETGTTSPQSMRNQIS 193
>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1316
Score = 25.0 bits (52), Expect = 4.8
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 242 KYTYSESGARLPPSAPNSVAKQGDPLYLQP 331
+Y Y ARLP AP AK G ++P
Sbjct: 83 RYRYLNKYARLPHEAPIKEAKLGPDTNIRP 112
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.0 bits (52), Expect = 4.8
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +2
Query: 242 KYTYSESGARLPPSAPNSVAKQGDPLYLQPHTVLITKSGVIQLIMKSKLP 391
K++YS++ +L PNS Q L LQ + L+ G I + + SK P
Sbjct: 66 KFSYSDALKKLRIDEPNSTVNQHHQLNLQ-YEALMNDLGGINIFL-SKPP 113
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 24.6 bits (51), Expect = 6.4
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = -1
Query: 321 YSGSPCFATLFGAEGGSLAPDSLYVYLYFLSTCLLTASLQFP 196
Y+GS T G P ++YV + +T T ++ +P
Sbjct: 248 YTGSTTLTTTVPHSGNETGPTTVYVETPYPTTVTTTTTVGYP 289
Score = 24.6 bits (51), Expect = 6.4
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = -1
Query: 321 YSGSPCFATLFGAEGGSLAPDSLYVYLYFLSTCLLTASLQFP 196
Y+GS T G P ++YV + +T T ++ +P
Sbjct: 326 YTGSTTLTTTVPHSGNETGPTTVYVETPYPTTVTTTTTVGYP 367
Score = 24.6 bits (51), Expect = 6.4
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = -1
Query: 321 YSGSPCFATLFGAEGGSLAPDSLYVYLYFLSTCLLTASLQFP 196
Y+GS T G P ++YV + +T T ++ +P
Sbjct: 404 YTGSTTLTTTVPHSGNETGPTTVYVETPYPTTVTTTTTVGYP 445
Score = 24.6 bits (51), Expect = 6.4
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = -1
Query: 321 YSGSPCFATLFGAEGGSLAPDSLYVYLYFLSTCLLTASLQFP 196
Y+GS T G P ++YV + +T T ++ +P
Sbjct: 482 YTGSTTLTTTVPHSGNETGPTTVYVETPYPTTVTTTTTVGYP 523
Score = 24.6 bits (51), Expect = 6.4
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = -1
Query: 321 YSGSPCFATLFGAEGGSLAPDSLYVYLYFLSTCLLTASLQFP 196
Y+GS T G P ++YV + +T T ++ +P
Sbjct: 560 YTGSTTLTTTVPHSGNETGPTTVYVETPYPTTVTTTTTVGYP 601
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,613,548
Number of Sequences: 5004
Number of extensions: 30274
Number of successful extensions: 113
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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