Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27f18
(423 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0719 + 5239238-5239635,5239735-5239945,5240379-5240454,524... 29 1.2
04_04_0996 + 29990255-29990425,29990797-29990841,29991024-299910... 29 2.0
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 28 2.7
07_03_0349 - 17051786-17052376 28 3.6
06_01_0806 - 6048042-6048138,6048461-6048550,6049362-6049425,604... 28 3.6
05_04_0068 + 17635693-17637204 27 4.7
03_02_0786 - 11169820-11170158,11170245-11170433,11171173-111714... 27 4.7
11_05_0014 + 18392622-18392834,18393064-18393147,18393709-183937... 27 6.2
04_04_1658 - 35119623-35119754,35121033-35121121,35121205-351215... 27 8.2
03_06_0459 + 34085134-34086269,34086471-34086717 27 8.2
02_05_0877 + 32403363-32404662,32406545-32406630,32406709-324070... 27 8.2
>06_01_0719 +
5239238-5239635,5239735-5239945,5240379-5240454,
5240573-5240675,5241089-5241157,5241318-5241354,
5241445-5241519,5241598-5241649,5241752-5241796,
5241994-5242080,5242348-5242445
Length = 416
Score = 29.5 bits (63), Expect = 1.2
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 170 KDIASSLKYGNCKDAVSRHVDKKY 241
K +A S+ GN KD VSR +DK Y
Sbjct: 136 KTLAESMALGNIKDYVSRPMDKPY 159
>04_04_0996 +
29990255-29990425,29990797-29990841,29991024-29991098,
29991481-29991691,29992057-29992442,29993202-29993425,
29993529-29993664,29993699-29993761,29993842-29994021
Length = 496
Score = 28.7 bits (61), Expect = 2.0
Identities = 11/42 (26%), Positives = 18/42 (42%)
Frame = -2
Query: 299 PRCLEPRAVVSPPTRCTYICIFYPRVCLQRLYNFHILNCWRC 174
P C +P + IC F+P + ++ N + CW C
Sbjct: 408 PNCRQPNPKIVEDNFSHIICTFHPFAVIWQMGNNSHMFCWAC 449
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 28.3 bits (60), Expect = 2.7
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -3
Query: 172 LGHKLDLRVSLLE-HVPQRKRVLAEFELPDFNLS 74
L KL+ LE H+P R+ + +F+LP F +S
Sbjct: 329 LAEKLNSEPEFLEKHIPTRQVTVGQFKLPKFKIS 362
>07_03_0349 - 17051786-17052376
Length = 196
Score = 27.9 bits (59), Expect = 3.6
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -2
Query: 299 PRCLEPRAVVSPPTRCTYICIFYPRVCLQR 210
P CL R +V PPTR Y R+ L R
Sbjct: 42 PACLRRRRLVLPPTRLAYYAAAVGRLRLHR 71
>06_01_0806 -
6048042-6048138,6048461-6048550,6049362-6049425,
6049504-6049552,6050403-6050459,6050953-6051024,
6051912-6052003,6052542-6052614,6052686-6052748,
6052837-6052901,6053803-6053890,6053974-6054015,
6054097-6054188,6054601-6054688,6055134-6055225,
6055368-6055419
Length = 391
Score = 27.9 bits (59), Expect = 3.6
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +2
Query: 206 KDAVSRHVDKKYKYTYSESGARLPPSAPNSVAKQGDPLYLQPHTVLITK 352
+D HVDKK +T + G ++ + A+ P +QP V++ +
Sbjct: 258 RDGADIHVDKKISFTQAMLGGKVEVPTLDGTAEVKIPKGVQPGQVIVLR 306
>05_04_0068 + 17635693-17637204
Length = 503
Score = 27.5 bits (58), Expect = 4.7
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 167 AKDIASSLKYGNCKDAVSRHVDKKYKYTYSESGARLPPSAPNSVAKQ 307
++ SS Y + K + SRH Y + S ARL +P +A++
Sbjct: 41 SRSARSSSYYSSSKSSSSRHRYAPYSISSSRRLARLEDKSPRDIARR 87
>03_02_0786 -
11169820-11170158,11170245-11170433,11171173-11171469,
11171568-11171630,11171884-11171997,11173011-11173091,
11173176-11173307,11174265-11174363,11174453-11174530,
11174641-11174901
Length = 550
Score = 27.5 bits (58), Expect = 4.7
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = -2
Query: 248 YICIFYPRVCLQRLYN--FHILNCWRCPWP 165
++CI +P L L+N F I + W P P
Sbjct: 292 FVCIMHPHATLSSLFNSFFDIFSHWHWPLP 321
>11_05_0014 +
18392622-18392834,18393064-18393147,18393709-18393797,
18393889-18394063,18394370-18394489,18394591-18394677,
18394755-18394826,18395166-18395279,18395387-18395487,
18395576-18395669,18395794-18395961,18396287-18396352,
18396475-18396531,18396708-18396927,18397015-18397151,
18397573-18397641,18397722-18397781,18397927-18397998,
18398171-18398218,18398376-18398495,18398743-18398808,
18399341-18399453,18399821-18399905,18400246-18400356,
18400436-18400531,18401075-18401143,18401235-18401453
Length = 974
Score = 27.1 bits (57), Expect = 6.2
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = +2
Query: 143 GNPQVKFVAKDIASSLKYGNCKDAVSRHVDKKYKYTYSESGARLPPSA 286
G Q+K + Y N K V + ++KYKY + G P A
Sbjct: 576 GQGQLKLQYNAAGALSLYSNSKTQVEANFEQKYKYYIGQDGNGSDPQA 623
>04_04_1658 - 35119623-35119754,35121033-35121121,35121205-35121599,
35122009-35122091,35122163-35124184,35124859-35124927,
35125050-35125130,35125215-35125308,35125435-35125499,
35125961-35126038,35126115-35126360
Length = 1117
Score = 26.6 bits (56), Expect = 8.2
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +2
Query: 263 GARLPPSAPNSVAKQGDPLYLQ---PHTVLITKSGVIQLIMKSKLPYAIELQEMA 418
GA PP+APN+ A G P L+ P TV I+ IQ SKL E+ + A
Sbjct: 1000 GAPPPPAAPNAAAAGGFPACLRLMPPSTVAIS----IQAKPGSKLATITEIGDEA 1050
>03_06_0459 + 34085134-34086269,34086471-34086717
Length = 460
Score = 26.6 bits (56), Expect = 8.2
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -2
Query: 287 EPRAVVSPPTRCTYICIFYPRVCLQRLYNFH 195
EP A +P TR ++ YPR CL+R Y H
Sbjct: 269 EP-AAAAPVTRYAWVEETYPRECLERGYFPH 298
>02_05_0877 + 32403363-32404662,32406545-32406630,32406709-32407077,
32407174-32407257,32407362-32407784,32408368-32408434,
32409238-32409430,32409577-32409680,32409787-32409990,
32410174-32410427,32410511-32410735,32410812-32411033,
32411109-32411162,32411337-32411402,32411496-32411633,
32411979-32412032,32412334-32412393,32412975-32413340,
32413415-32413582
Length = 1478
Score = 26.6 bits (56), Expect = 8.2
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -3
Query: 391 RKLALHNQLNHARFSNKHCMRLQIQRIALLCHAVWSRGR*SRPRL 257
+K A Q F+N MR++++++ LLC + R + R R+
Sbjct: 1261 QKEADMQQYGLEEFNNMKRMRVELEKLRLLCERIIKREKVKRERV 1305
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,791,784
Number of Sequences: 37544
Number of extensions: 205464
Number of successful extensions: 652
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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