Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27f16
(337 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0819 + 7545656-7546006,7546087-7546162,7547196-7547401,754... 29 0.71
11_01_0697 - 5743089-5744902,5745091-5745751,5747918-5748910 27 2.9
06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850 27 2.9
03_03_0094 + 14378953-14380728 27 2.9
02_02_0375 + 9543411-9543872,9547222-9547290,9547382-9547384,954... 27 2.9
05_04_0185 - 18857229-18857638,18858347-18858424,18858758-18859931 27 3.8
02_04_0437 - 22938263-22938273,22938345-22938444,22938727-229389... 27 3.8
01_03_0001 + 11500567-11500696,11503312-11503397,11503515-115040... 26 6.6
10_03_0013 + 7045552-7045686,7045868-7046083 26 8.7
04_04_1409 + 33359206-33359643 26 8.7
>12_01_0819 +
7545656-7546006,7546087-7546162,7547196-7547401,
7547498-7547584,7547673-7547765,7548172-7548326,
7548470-7548554,7548632-7548718,7548801-7548920,
7549707-7549808,7549903-7550070
Length = 509
Score = 29.5 bits (63), Expect = 0.71
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +1
Query: 58 NMNTSVDAVTKLIRLQNDVLD-MMREVDQYLNSDTPDYTIESLNAP 192
N+ + T+L+RL+ +L ++ ++++N D PD+T+ AP
Sbjct: 459 NLEPKKEVATRLVRLEKKLLHGCLQAANEFIN-DLPDHTVSPCPAP 503
>11_01_0697 - 5743089-5744902,5745091-5745751,5747918-5748910
Length = 1155
Score = 27.5 bits (58), Expect = 2.9
Identities = 9/43 (20%), Positives = 28/43 (65%)
Frame = +1
Query: 205 DFLDEMLTKKLIESNAMVFDETNKNLKFIHNSISICLNRCINL 333
++L ++++ K ++ N +E+ +++K + + +CL+RC ++
Sbjct: 1037 NWLGQLVSLKELKINRFEMNESQEDIKHLMSLQKLCLHRCTSM 1079
>06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850
Length = 1173
Score = 27.5 bits (58), Expect = 2.9
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 54 KKHEHVRGRGDKAHSFAERRVGHDARSGPISKQRHARLH 170
K H H+R +G + + + RR H A S S R L+
Sbjct: 23 KGHHHLRSKGLSSPAASRRRGAHSASSSASSSSRRRVLY 61
>03_03_0094 + 14378953-14380728
Length = 591
Score = 27.5 bits (58), Expect = 2.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 51 KKKHEHVRGRGDKAHSFAERRVGHDARSGPISKQR 155
KKK +H GD A +R+VG D S +S ++
Sbjct: 471 KKKKKHKDWAGDNADEGRKRKVGDDDLSASVSAKK 505
>02_02_0375 +
9543411-9543872,9547222-9547290,9547382-9547384,
9548336-9548422,9549027-9549094,9549192-9549333
Length = 276
Score = 27.5 bits (58), Expect = 2.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 161 GVSLFRYWSTSRIMSNTSFC 102
G S+FRYW RI S T+ C
Sbjct: 240 GRSIFRYWPPGRIGSTTTDC 259
>05_04_0185 - 18857229-18857638,18858347-18858424,18858758-18859931
Length = 553
Score = 27.1 bits (57), Expect = 3.8
Identities = 21/99 (21%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Frame = +1
Query: 28 QLLQFSF-QKRNMNTSVDAVTKLIRLQNDVLDMMREVDQYLNSDTPDYT--IESLN---- 186
Q + F F Q R + T + A + + + + ++ D P T +E++N
Sbjct: 345 QAITFVFKQLRKICTGIQAQRSMKHSDYNFCNKIVQIPLSYGEDKPRKTDEVETINEEYE 404
Query: 187 APGKQFDFLDEMLTKKLIESNAMVFDETNKNLKFIHNSI 303
+ ++ D +DE+ + I +M+ D+ L+F+ S+
Sbjct: 405 SSDEELDLIDELADEITIRDLSMINDDMIIGLRFLQQSV 443
>02_04_0437 -
22938263-22938273,22938345-22938444,22938727-22938908,
22938989-22939092,22939792-22939857,22940032-22940105,
22940241-22940309,22940902-22941028,22941740-22942971,
22943163-22943486,22943500-22943793
Length = 860
Score = 27.1 bits (57), Expect = 3.8
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -1
Query: 211 KNQTVCPARLRILWCNRACR 152
+ ++CP+R+R + +RACR
Sbjct: 789 RTDSICPSRVRAMLASRACR 808
>01_03_0001 +
11500567-11500696,11503312-11503397,11503515-11504097,
11504242-11504474
Length = 343
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/43 (25%), Positives = 26/43 (60%)
Frame = +1
Query: 130 EVDQYLNSDTPDYTIESLNAPGKQFDFLDEMLTKKLIESNAMV 258
+V ++++ P Y + A G+ + LD +L +KL+ ++++V
Sbjct: 296 QVHRHVSEPPPSYFSNNAKANGRSQEDLDVVLQQKLVINDSLV 338
>10_03_0013 + 7045552-7045686,7045868-7046083
Length = 116
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 30 IVAI*FSKKKHEHVRGRGDKAHSFAERRVGHDARSGPISKQRHAR 164
+ AI +K+K R A FAE+ R+G + + +HA+
Sbjct: 56 LAAIENTKRKRNEERELRKMAREFAEKNERAKERAGKVDRAQHAK 100
>04_04_1409 + 33359206-33359643
Length = 145
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -2
Query: 111 VVLQTNELCHRVHGRVHVSF--LKTKLQQLYV 22
VVL +CHRVH H + L L++++V
Sbjct: 59 VVLDGRSICHRVHLSKHTGYRSLAAALRRMFV 90
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,857,215
Number of Sequences: 37544
Number of extensions: 134811
Number of successful extensions: 419
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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