Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27f16
         (337 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022984-10|AAB69958.1|  358|Caenorhabditis elegans Hypothetical...    32   0.089
U80452-6|AAB37858.1|  592|Caenorhabditis elegans Hypothetical pr...    30   0.47 
U00066-9|AAA50743.3|  780|Caenorhabditis elegans Mediator protei...    30   0.47 
U00066-8|AAM54164.1|  777|Caenorhabditis elegans Mediator protei...    30   0.47 
Z83127-5|CAB05628.2|  575|Caenorhabditis elegans Hypothetical pr...    27   3.3  
AF016448-6|AAB65951.1|  217|Caenorhabditis elegans Hypothetical ...    27   3.3  
Z74043-6|CAA98543.1|  124|Caenorhabditis elegans Hypothetical pr...    27   4.4  
U82967-1|AAB40926.1|  124|Caenorhabditis elegans MAX-like-1 homo...    27   4.4  
Z67755-5|CAA91758.2|  966|Caenorhabditis elegans Hypothetical pr...    26   5.8  
AF200199-1|AAF13716.1|  966|Caenorhabditis elegans MES-1 protein.      26   5.8  
AF016675-3|AAB66138.2|  396|Caenorhabditis elegans Hypothetical ...    26   5.8  
Z78539-3|CAB01730.1|  177|Caenorhabditis elegans Hypothetical pr...    26   7.7  
Z54235-7|CAA90974.3|  611|Caenorhabditis elegans Hypothetical pr...    26   7.7  

>AF022984-10|AAB69958.1|  358|Caenorhabditis elegans Hypothetical
           protein ZK488.1 protein.
          Length = 358

 Score = 32.3 bits (70), Expect = 0.089
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +1

Query: 97  RLQNDVLDMMREVDQYLNSDTPDYTIESLNAPGKQFDFLDEML 225
           R Q D+L +  +  Q L +D  DY ++ LN P K FD L +++
Sbjct: 275 RCQGDILKITEKFQQILANDLHDYYVDVLNMP-KYFDRLAKLM 316


>U80452-6|AAB37858.1|  592|Caenorhabditis elegans Hypothetical
           protein C16C8.16 protein.
          Length = 592

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
 Frame = +1

Query: 67  TSVDAVTKLIRLQNDVLDMMREVDQYLNSDTPDYTIESLNAPGKQFDF-LDEMLTKKLIE 243
           TS+  + +++ +   +     E  Q    +  + +IE+LN+  K     L+E  TKK  E
Sbjct: 77  TSIKDLLEILEIIQKIFKKQDEFQQV--QENQNKSIENLNSELKTVKAELNE--TKKQQE 132

Query: 244 SNAMVFDETNKNLKFIHNSI 303
           S   + D ++KNLK I  SI
Sbjct: 133 SQEKLIDNSDKNLKLILESI 152


>U00066-9|AAA50743.3|  780|Caenorhabditis elegans Mediator protein
           15, isoform a protein.
          Length = 780

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 60  HEHVRGRGDKAHSFAERRVGHDARSGPISKQRHA 161
           H  ++G G   H      +GHD  + P++  RHA
Sbjct: 514 HMMMQGGGGPVHGMYRGDMGHDPMTSPVNNHRHA 547


>U00066-8|AAM54164.1|  777|Caenorhabditis elegans Mediator protein
           15, isoform b protein.
          Length = 777

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 60  HEHVRGRGDKAHSFAERRVGHDARSGPISKQRHA 161
           H  ++G G   H      +GHD  + P++  RHA
Sbjct: 511 HMMMQGGGGPVHGMYRGDMGHDPMTSPVNNHRHA 544


>Z83127-5|CAB05628.2|  575|Caenorhabditis elegans Hypothetical
           protein T23F6.5 protein.
          Length = 575

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = -1

Query: 217 HLKNQTVCPARLRILWCNRACRCLDIGPLRASCPTRR 107
           H     +C  R  + +C + CR LD     A C  +R
Sbjct: 304 HSSTARMCVGRPGLAYCRQKCRALDASESSARCLRQR 340


>AF016448-6|AAB65951.1|  217|Caenorhabditis elegans Hypothetical
           protein F41E6.9 protein.
          Length = 217

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +1

Query: 43  SFQKRNMNTSVDAVTKLIRLQNDVLDMMREVDQYLNS--DTPDYTIESLNA 189
           + QK     ++D +  L     D+LDM  E+ + ++   DTPD     L A
Sbjct: 114 TMQKEYKKMNIDQIEDLQDQMEDMLDMNNEIQEAMSRQYDTPDIDEADLEA 164


>Z74043-6|CAA98543.1|  124|Caenorhabditis elegans Hypothetical
           protein T19B10.11 protein.
          Length = 124

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 117 GHDARSGPISKQRHARLHHRILKR 188
           G    SGP   +RHAR  H  L+R
Sbjct: 16  GSGEHSGPFDPKRHAREQHNALER 39


>U82967-1|AAB40926.1|  124|Caenorhabditis elegans MAX-like-1 homolog
           protein.
          Length = 124

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 117 GHDARSGPISKQRHARLHHRILKR 188
           G    SGP   +RHAR  H  L+R
Sbjct: 16  GSGEHSGPFDPKRHAREQHNALER 39


>Z67755-5|CAA91758.2|  966|Caenorhabditis elegans Hypothetical
           protein F54F7.5 protein.
          Length = 966

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = +1

Query: 43  SFQKRNMNTSVDAVTKLIRLQNDVLDMMREVDQYLNSDTPDYTIESLNAPGKQFDFL 213
           +FQ  N N  ++   +   L   V+D++R  + Y      DYT E+++A  K+ +FL
Sbjct: 652 NFQVHNFNERIEK--QAYWLMATVVDVVRR-ELYSLKVPKDYTPETISAMRKELEFL 705


>AF200199-1|AAF13716.1|  966|Caenorhabditis elegans MES-1 protein.
          Length = 966

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = +1

Query: 43  SFQKRNMNTSVDAVTKLIRLQNDVLDMMREVDQYLNSDTPDYTIESLNAPGKQFDFL 213
           +FQ  N N  ++   +   L   V+D++R  + Y      DYT E+++A  K+ +FL
Sbjct: 652 NFQVHNFNERIEK--QAYWLMATVVDVVRR-ELYSLKVPKDYTPETISAMRKELEFL 705


>AF016675-3|AAB66138.2|  396|Caenorhabditis elegans Hypothetical
           protein T27B7.6 protein.
          Length = 396

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 97  RLQNDVLDMMREVDQYLNSDTPDYTIESLNAPGKQFDFLDEML 225
           R Q D+L +  +  + L +D   Y +E +N P + F  L  +L
Sbjct: 313 RYQGDILRVAEQFQEILANDLHHYYVEEMNRP-RYFQRLARLL 354


>Z78539-3|CAB01730.1|  177|Caenorhabditis elegans Hypothetical
           protein C31E10.4 protein.
          Length = 177

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +1

Query: 40  FSFQKRNMNTSVDAVTKLIRLQNDVL-DMMREVDQYLNSDTPDYTIESLNAPGKQFDFLD 216
           F  +KR +N  +     +  + N  L D+      Y  +  PD  I   NAP   +DF+D
Sbjct: 59  FQKKKRGLNFGLYTSPAIQLISNPNLKDIFINNMAYPYTPGPDRFIIRNNAPNLFYDFID 118

Query: 217 EMLTKKLIESN 249
            M  +  ++SN
Sbjct: 119 CMNYETSVKSN 129


>Z54235-7|CAA90974.3|  611|Caenorhabditis elegans Hypothetical
           protein C09G9.4 protein.
          Length = 611

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -2

Query: 90  LCHRVHGRVHVSFLKTKLQQLYVSTI 13
           +CH  H R H  F    L  L  STI
Sbjct: 179 ICHTHHPRYHAKFAGKSLADLVASTI 204


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,210,954
Number of Sequences: 27780
Number of extensions: 132894
Number of successful extensions: 453
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)