Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27f14
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0603 - 30295130-30295389,30296840-30296987                       53   1e-07
01_07_0124 + 41212728-41212922,41215156-41215210,41215336-412171...    28   5.2  
09_06_0333 + 22385995-22386196,22386605-22386663,22387544-223877...    27   9.1  

>02_05_0603 - 30295130-30295389,30296840-30296987
          Length = 135

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 21/53 (39%), Positives = 35/53 (66%)
 Frame = +3

Query: 294 DRRTKAEIAYQNMQEKMQKQRILQKAEMTHKQRVEKFNQHLDSLTEHFDIPKV 452
           D  T AE  Y   ++K+   ++ + A  +H+ R++ FNQ+L +L+EH+DIPKV
Sbjct: 80  DHLTPAERRYMEQKQKIDMHKLAKVANKSHRDRIQDFNQYLANLSEHYDIPKV 132


>01_07_0124 +
           41212728-41212922,41215156-41215210,41215336-41217128,
           41217363-41217521,41217883-41218054,41218173-41218471,
           41219060-41219368
          Length = 993

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +3

Query: 288 NVDRRTKAEIAYQNMQEKMQKQRILQKAEMTHKQRVEKFNQHLDSL 425
           ++D+R++AE   + +QEK++    +QKA +     V K    L  L
Sbjct: 50  DLDKRSQAETQRRKIQEKLRVALFVQKAALQFIDAVRKTEHPLPEL 95


>09_06_0333 +
           22385995-22386196,22386605-22386663,22387544-22387762,
           22387849-22388097
          Length = 242

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 300 RTKAEIAYQNMQEKMQKQRILQKAEMTHKQR 392
           +  +E+  QN     Q QR+ + AE+ HK+R
Sbjct: 3   KVNSELVLQNCYIMEQNQRLKKAAELLHKER 33


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,193,277
Number of Sequences: 37544
Number of extensions: 121830
Number of successful extensions: 314
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)