Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27f12
(561 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce... 40 2e-04
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c... 25 5.8
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 7.6
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 7.6
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 7.6
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 7.6
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 7.6
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 7.6
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 7.6
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 7.6
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 7.6
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 7.6
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 7.6
>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 520
Score = 40.3 bits (90), Expect = 2e-04
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 10/74 (13%)
Frame = +2
Query: 353 YTFFGIRYAEPPLGPRRFQRPVRQYLASELNATRQCLP--CPQRDPYYPDR--------F 502
+ F GIRYA+PP+G R++RPV + + CPQ P+Y +R F
Sbjct: 19 HRFTGIRYAKPPVGKLRWRRPVTLEDGYDYSGDYNQFKTICPQ--PFYNNRKNQVRNPDF 76
Query: 503 IGHEDCLCLNVFAP 544
EDCL LN++ P
Sbjct: 77 KYDEDCLFLNIWVP 90
>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 625
Score = 25.4 bits (53), Expect = 5.8
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -3
Query: 553 RHFGSEYIETQTIFVTNKSV 494
RHFG++Y++ T + TNK V
Sbjct: 442 RHFGAQYVDCDTDY-TNKGV 460
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 7.6
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +1
Query: 274 RCSCSFHPATW 306
RC CS HP TW
Sbjct: 1097 RCVCSTHPNTW 1107
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 7.6
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +1
Query: 274 RCSCSFHPATW 306
RC CS HP TW
Sbjct: 1097 RCVCSTHPNTW 1107
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 7.6
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +1
Query: 274 RCSCSFHPATW 306
RC CS HP TW
Sbjct: 1097 RCVCSTHPNTW 1107
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 7.6
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +1
Query: 274 RCSCSFHPATW 306
RC CS HP TW
Sbjct: 1097 RCVCSTHPNTW 1107
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 7.6
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +1
Query: 274 RCSCSFHPATW 306
RC CS HP TW
Sbjct: 1097 RCVCSTHPNTW 1107
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 7.6
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +1
Query: 274 RCSCSFHPATW 306
RC CS HP TW
Sbjct: 1097 RCVCSTHPNTW 1107
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 7.6
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +1
Query: 274 RCSCSFHPATW 306
RC CS HP TW
Sbjct: 1097 RCVCSTHPNTW 1107
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 7.6
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +1
Query: 274 RCSCSFHPATW 306
RC CS HP TW
Sbjct: 1097 RCVCSTHPNTW 1107
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 7.6
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +1
Query: 274 RCSCSFHPATW 306
RC CS HP TW
Sbjct: 1097 RCVCSTHPNTW 1107
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 7.6
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +1
Query: 274 RCSCSFHPATW 306
RC CS HP TW
Sbjct: 1097 RCVCSTHPNTW 1107
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 7.6
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +1
Query: 274 RCSCSFHPATW 306
RC CS HP TW
Sbjct: 1097 RCVCSTHPNTW 1107
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,960,136
Number of Sequences: 5004
Number of extensions: 35041
Number of successful extensions: 82
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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