Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27f12
         (561 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0913 + 8882193-8883510,8887633-8887865,8889619-8889871,889...    30   1.1  
02_05_1286 - 35456234-35456677,35456862-35457401                       27   7.7  

>12_01_0913 +
           8882193-8883510,8887633-8887865,8889619-8889871,
           8891281-8891470,8891641-8891773,8891797-8891886
          Length = 738

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
 Frame = +1

Query: 205 CSADLVSSRYSCCRRCAGVTSGTRCSCSFHPAT---WQKREARGSQRRQTRL 351
           C +      +  C   AG TS  RC   F PA+   W  RE  G  RR   L
Sbjct: 305 CDSYAKCGAFGLCDSNAGATSICRCVKGFSPASPAEWSMREYSGGCRRDVAL 356


>02_05_1286 - 35456234-35456677,35456862-35457401
          Length = 327

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 311 SARLEGLKDDKLGYYTFFGIR 373
           SA    L D KL YYTF+G+R
Sbjct: 8   SAEFRILTDYKLHYYTFYGLR 28


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,021,828
Number of Sequences: 37544
Number of extensions: 239843
Number of successful extensions: 613
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)