Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27f12
         (561 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    49   4e-08
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           49   4e-08
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    42   6e-06
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    42   6e-06
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   0.91 
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   2.1  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   2.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   2.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   2.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   2.8  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    22   3.7  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    22   3.7  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 48.8 bits (111), Expect = 4e-08
 Identities = 30/69 (43%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
 Frame = +2

Query: 350 YYTFFGIRYAEPPLGPRRFQRPVR-QYLASELNATRQCLPCPQRD--PYYP-DRFIGHED 517
           Y  + GI YA PP+G  RF+ P +      EL+AT+   PC Q    P  P D+  G ED
Sbjct: 45  YEAYEGIPYALPPVGKFRFKAPQKIPAWIGELSATKFGFPCLQYTQLPVNPRDKIEGAED 104

Query: 518 CLCLNVFAP 544
           CL LNV+ P
Sbjct: 105 CLYLNVYVP 113


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 48.8 bits (111), Expect = 4e-08
 Identities = 30/69 (43%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
 Frame = +2

Query: 350 YYTFFGIRYAEPPLGPRRFQRPVR-QYLASELNATRQCLPCPQRD--PYYP-DRFIGHED 517
           Y  + GI YA PP+G  RF+ P +      EL+AT+   PC Q    P  P D+  G ED
Sbjct: 45  YEAYEGIPYALPPVGKFRFKAPQKIPAWIGELSATKFGFPCLQYTQLPVNPRDKIEGAED 104

Query: 518 CLCLNVFAP 544
           CL LNV+ P
Sbjct: 105 CLYLNVYVP 113


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 41.5 bits (93), Expect = 6e-06
 Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 12/77 (15%)
 Frame = +2

Query: 353 YTFFGIRYAEPPLGPRRFQRPVR-QYLASELNATRQCLPCPQ-RDPYYPDRFIGH----- 511
           + F+GI +A+PP+GP RF++P+  +     LNAT     C Q R  Y+P  F G      
Sbjct: 60  HVFYGIPFAKPPIGPLRFRKPLPIEPWHGVLNATVLPNSCYQERYEYFPG-FPGEEMWNP 118

Query: 512 -----EDCLCLNVFAPK 547
                EDCL LN++ P+
Sbjct: 119 NTNISEDCLYLNIWVPQ 135


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 41.5 bits (93), Expect = 6e-06
 Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 12/77 (15%)
 Frame = +2

Query: 353 YTFFGIRYAEPPLGPRRFQRPVR-QYLASELNATRQCLPCPQ-RDPYYPDRFIGH----- 511
           + F+GI +A+PP+GP RF++P+  +     LNAT     C Q R  Y+P  F G      
Sbjct: 60  HVFYGIPFAKPPIGPLRFRKPLPIEPWHGVLNATVLPNSCYQERYEYFPG-FPGEEMWNP 118

Query: 512 -----EDCLCLNVFAPK 547
                EDCL LN++ P+
Sbjct: 119 NTNISEDCLYLNIWVPQ 135


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.2 bits (50), Expect = 0.91
 Identities = 11/39 (28%), Positives = 14/39 (35%)
 Frame = +2

Query: 368 IRYAEPPLGPRRFQRPVRQYLASELNATRQCLPCPQRDP 484
           + Y +PP     +   V    AS       C P P R P
Sbjct: 364 LHYRQPPTLSESYSSYVNSMYASGAQFATPCTPSPPRGP 402


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 4/34 (11%)
 Frame = +1

Query: 163 YRCFSDDL----ALVLCCCSADLVSSRYSCCRRC 252
           Y C+S D       +LC C    V  RY    RC
Sbjct: 390 YACWSRDFRRAFVRILCACCPGRVRRRYQPAFRC 423


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 456 NAYRVRNETLTIP 494
           NAY ++N+T+T P
Sbjct: 235 NAYLIKNQTITCP 247


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 456 NAYRVRNETLTIP 494
           NAY ++N+T+T P
Sbjct: 235 NAYLIKNQTITCP 247


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 456 NAYRVRNETLTIP 494
           NAY ++N+T+T P
Sbjct: 286 NAYLIKNQTITCP 298


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 456 NAYRVRNETLTIP 494
           NAY ++N+T+T P
Sbjct: 235 NAYLIKNQTITCP 247


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 204 TTQDQCQIITKATIVAEPEPTSY 136
           TTQ Q   + K  +V EP  T Y
Sbjct: 51  TTQAQIDDVDKGNLVNEPSITCY 73


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 204 TTQDQCQIITKATIVAEPEPTSY 136
           TTQ Q   + K  +V EP  T Y
Sbjct: 51  TTQAQIDDVDKGNLVNEPSITCY 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,837
Number of Sequences: 438
Number of extensions: 3356
Number of successful extensions: 16
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)