Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27f09
(587 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0971 + 8169197-8169311,8170351-8170458,8170533-8170725,817... 176 1e-44
01_06_1654 - 38924090-38924101,38924183-38924215,38924737-389248... 165 2e-41
03_06_0563 - 34738732-34738890,34738965-34739009,34739154-347392... 164 5e-41
05_06_0014 + 24854462-24854570,24854958-24855065,24855240-248554... 159 2e-39
04_03_0812 - 19922208-19922357,19922448-19922564,19922681-199227... 86 2e-17
03_06_0382 - 33530943-33530966,33531160-33531360,33535494-33537026 37 0.014
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 28 4.8
09_02_0286 - 6898041-6898144,6898881-6899005,6899158-6899207,689... 28 4.8
06_03_1275 + 28903961-28904123,28904225-28904322,28904406-289045... 28 4.8
01_04_0010 - 15058175-15058195,15058320-15058430,15059031-150592... 28 4.8
05_01_0421 + 3308692-3309070,3309199-3309339,3309776-3309897,331... 28 6.3
08_01_0355 - 3122374-3122520,3122912-3123047,3123124-3123221,312... 27 8.4
05_01_0360 + 2814139-2814627,2815203-2815334,2815480-2815583,281... 27 8.4
03_02_0389 - 8036575-8036841,8037011-8037133,8037516-8037736,803... 27 8.4
>07_01_0971 +
8169197-8169311,8170351-8170458,8170533-8170725,
8170811-8171069,8171151-8171207,8171433-8171480,
8171571-8171657,8171743-8171800,8171891-8171958,
8172066-8172161,8172244-8172291,8172658-8172696,
8172782-8172868,8173136-8173147
Length = 424
Score = 176 bits (428), Expect = 1e-44
Identities = 84/147 (57%), Positives = 107/147 (72%), Gaps = 2/147 (1%)
Frame = +1
Query: 106 DVFFEEKFPDDSWESNWVYSEHPGKE--FGKFKLTAGKFFSDPEDDKGLKTSEDARFYAL 279
+VFF+EKF +D WES WV SE E G++ T+GK+ DPED KG++TSED RFYA+
Sbjct: 30 EVFFQEKF-EDGWESRWVKSEWKKDENMAGEWNHTSGKWNGDPED-KGIQTSEDYRFYAI 87
Query: 280 SRKFKPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDIC 459
S ++ FSN+ K LV+QF+VKHEQ +DCGGGY+K+ ++QK G+TPY IMFGPDIC
Sbjct: 88 SAEYPEFSNKDKTLVLQFSVKHEQKLDCGGGYVKLLGGDVDQKKFGGDTPYSIMFGPDIC 147
Query: 460 GPGTKKVHVIFSYKGKNHLIKKRYPLQ 540
G TKKVH IF+ KNHLIKK P +
Sbjct: 148 GYSTKKVHTIFTKNDKNHLIKKDVPCE 174
Score = 33.9 bits (74), Expect = 0.097
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 521 KKDIRCKDDVYTHLYTLIVKPD 586
KKD+ C+ D +H+YTLI+ PD
Sbjct: 168 KKDVPCETDQLSHVYTLIIHPD 189
>01_06_1654 -
38924090-38924101,38924183-38924215,38924737-38924829,
38924909-38924965,38925048-38925143,38925237-38925304,
38925429-38925486,38925572-38925658,38925935-38925982,
38926060-38926116,38926200-38926458,38926666-38926858,
38926991-38927098,38927849-38927957
Length = 425
Score = 165 bits (401), Expect = 2e-41
Identities = 76/142 (53%), Positives = 104/142 (73%), Gaps = 2/142 (1%)
Frame = +1
Query: 106 DVFFEEKFPDDSWESNWVYSEHPGKE--FGKFKLTAGKFFSDPEDDKGLKTSEDARFYAL 279
+V FEE+F +D WES WV S+ E G FK TAG++ DP DDKG++T+ DAR +A+
Sbjct: 28 EVIFEERF-EDGWESRWVKSDWKRSEGKAGTFKHTAGRYSGDP-DDKGIQTTLDARHFAI 85
Query: 280 SRKFKPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDIC 459
S K FSN+G+ LV+Q+++K EQDI+CGGGY+K+ + QK G+TPY +MFGPDIC
Sbjct: 86 SAKIPEFSNKGRTLVLQYSIKFEQDIECGGGYIKLMSGYVNQKKFSGDTPYSLMFGPDIC 145
Query: 460 GPGTKKVHVIFSYKGKNHLIKK 525
G TKK+H+I SY+G+N+ IKK
Sbjct: 146 GTQTKKLHLILSYQGQNYPIKK 167
Score = 35.1 bits (77), Expect = 0.042
Identities = 12/22 (54%), Positives = 18/22 (81%)
Frame = +2
Query: 521 KKDIRCKDDVYTHLYTLIVKPD 586
KKD++C+ D TH+YT I++PD
Sbjct: 166 KKDLQCETDKLTHVYTFILRPD 187
>03_06_0563 -
34738732-34738890,34738965-34739009,34739154-34739201,
34739291-34739386,34739467-34739534,34739633-34739690,
34739783-34739869,34740004-34740051,34740360-34740416,
34740525-34740783,34740877-34741102,34741168-34741275,
34741885-34741987
Length = 453
Score = 164 bits (398), Expect = 5e-41
Identities = 81/155 (52%), Positives = 103/155 (66%), Gaps = 12/155 (7%)
Frame = +1
Query: 106 DVFFEEKFPDDSWESNWVYSE--HPGKEFGKFKLTAGKFFSDPEDD----------KGLK 249
+VFF+EKF DD WE WV SE G++ T+GK++ D +D G++
Sbjct: 26 EVFFQEKF-DDGWEDRWVKSEWKKDDNRAGEWNHTSGKWYGDADDKGMCEVTLLLCAGIQ 84
Query: 250 TSEDARFYALSRKFKPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETP 429
TSED RFYA+S K+ FS++ K LV+QF+VKHEQ +DCGGGY+K+ ++QK GETP
Sbjct: 85 TSEDYRFYAISAKYPEFSSKDKTLVLQFSVKHEQKLDCGGGYVKLLGGDVDQKKFGGETP 144
Query: 430 YEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKRYP 534
Y IMFGPDICG TKKVH I + GKNHLIKK P
Sbjct: 145 YSIMFGPDICGYATKKVHAILTKNGKNHLIKKDVP 179
Score = 38.3 bits (85), Expect = 0.004
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +2
Query: 521 KKDIRCKDDVYTHLYTLIVKPD 586
KKD+ CK D TH+YTLI++PD
Sbjct: 175 KKDVPCKTDQLTHVYTLIIRPD 196
>05_06_0014 +
24854462-24854570,24854958-24855065,24855240-24855432,
24855892-24856150,24856236-24856292,24856370-24856417,
24856725-24856811,24856885-24856942,24857084-24857151,
24857279-24857374,24857483-24857539,24857906-24857952,
24858184-24858210,24858312-24858504
Length = 468
Score = 159 bits (386), Expect = 2e-39
Identities = 74/145 (51%), Positives = 102/145 (70%), Gaps = 2/145 (1%)
Frame = +1
Query: 97 INCDVFFEEKFPDDSWESNWVYSEHPGKE--FGKFKLTAGKFFSDPEDDKGLKTSEDARF 270
++ +V FEE+F DD W S WV S+ E G FK TAG + DP DD+G++T+ DA+
Sbjct: 25 VSGEVIFEERF-DDDWGSRWVKSDWKKSEGKAGTFKHTAGSYSGDP-DDRGIQTTSDAKH 82
Query: 271 YALSRKFKPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGP 450
+A+S KF FSN+ + LVVQ+++K EQDI+CGG Y+K+ + QK G+TPY MFGP
Sbjct: 83 FAISAKFPEFSNKNRTLVVQYSIKIEQDIECGGAYIKLMSGYVNQKKFGGDTPYSFMFGP 142
Query: 451 DICGPGTKKVHVIFSYKGKNHLIKK 525
DICG TKK+H+I SY+G+N+ IKK
Sbjct: 143 DICGDQTKKLHLILSYQGQNYPIKK 167
Score = 35.1 bits (77), Expect = 0.042
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 521 KKDIRCKDDVYTHLYTLIVKPD 586
KKD++C+ D TH YT I++PD
Sbjct: 166 KKDLKCETDKLTHFYTFILRPD 187
>04_03_0812 -
19922208-19922357,19922448-19922564,19922681-19922752,
19922864-19923993,19924939-19925008,19925125-19925199
Length = 537
Score = 85.8 bits (203), Expect = 2e-17
Identities = 55/136 (40%), Positives = 75/136 (55%), Gaps = 4/136 (2%)
Frame = +1
Query: 106 DVFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYALSR 285
D F E F D+S+E WV S GK+ K K SD +D GL SE A+ YA+ +
Sbjct: 24 DPLFYEPF-DESFEGRWVLS---GKDDYKGVWKHEK--SDGHEDYGLLVSEKAKKYAIIK 77
Query: 286 KF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVF---DCKLEQKDMHGETPYEIMFGPD 453
+ +P + + +V+QF V+ + ++CGG YLK D + K+ ETPY IMFGPD
Sbjct: 78 ELDEPVTLKDGTVVLQFEVRLQNGLECGGAYLKYIRPQDAAWDAKEFDNETPYTIMFGPD 137
Query: 454 ICGPGTKKVHVIFSYK 501
CG T KVH I +K
Sbjct: 138 KCG-STNKVHFILKHK 152
>03_06_0382 - 33530943-33530966,33531160-33531360,33535494-33537026
Length = 585
Score = 36.7 bits (81), Expect = 0.014
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = +2
Query: 521 KKDIRCKDDVYTHLYTLIVKPD 586
KKD+ C+ D TH+YTLI++PD
Sbjct: 521 KKDVPCETDQLTHVYTLIIRPD 542
>11_06_0767 +
27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -1
Query: 455 MSGPNIISYGVSPCMSFCSSLQSKTLRYPPPQSMSCSCLTVNWTTKGL 312
M GP ++ ++P S +Q + +++ +SC+CL T+KGL
Sbjct: 674 MLGPTVLV--LAPTRELASQIQDEAVKFGRSSRVSCTCL-YGGTSKGL 718
>09_02_0286 -
6898041-6898144,6898881-6899005,6899158-6899207,
6899245-6899386,6899951-6900020,6900077-6900216,
6900291-6900365,6901083-6904723
Length = 1448
Score = 28.3 bits (60), Expect = 4.8
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = -1
Query: 362 QSMSCSCLTVNWTTKGLPSLLNGLNLRERA*NLASSEVFKPLSSSGSLKNFPAVNLNFPN 183
+S+ L+ N + G+P L GLN +++++ + P+ SSG L FP + N
Sbjct: 738 KSIGALDLSNNQLSGGIPPGLGGLNFLADF-DVSNNNLTGPIPSSGQLTTFPPSRYDNNN 796
Query: 182 SFPGCSL 162
G L
Sbjct: 797 GLCGIPL 803
>06_03_1275 +
28903961-28904123,28904225-28904322,28904406-28904550,
28904690-28904814,28904957-28905049,28905297-28905362,
28905459-28905524,28905790-28905870,28905947-28906123,
28906212-28906287,28906394-28906521,28906639-28906950
Length = 509
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -2
Query: 142 TNHQETSPQRIHHNLSKIMPA-S*QRPVQQLSFSIHS 35
TNH E P+ H LSKI+ A S RP+ +S+ +H+
Sbjct: 41 TNHVERPPKERH--LSKIIAAASGARPLADVSYCVHA 75
>01_04_0010 -
15058175-15058195,15058320-15058430,15059031-15059246,
15059327-15059505,15059655-15059820,15059914-15059972,
15060065-15060107,15060285-15060354,15060458-15060547,
15060621-15060742,15060777-15060808,15060876-15061064,
15061148-15061241,15061325-15061412,15061498-15061718,
15061924-15061997,15062081-15062363,15062455-15062589,
15062721-15062942,15063029-15063208,15063305-15063402,
15063522-15063634,15064156-15064259,15064400-15064522,
15064857-15065192
Length = 1122
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = -3
Query: 426 GLSVHVLLLQFAVKDLKVSASTVNVLFMFDSELDDQGFTLITERFELTGESIEPRIFR 253
G V LL L ++ +T +V+ ++DS+ + Q +R G+ E ++FR
Sbjct: 598 GSEKFVFLLSTRAGGLGINLATADVVVLYDSDWNPQADLQAQDRAHRIGQKKEVQVFR 655
>05_01_0421 +
3308692-3309070,3309199-3309339,3309776-3309897,
3310369-3310632,3310719-3310849,3311254-3311461,
3311564-3311632,3311722-3311799,3312448-3312621
Length = 521
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -1
Query: 140 ESSGNFSSKNTSQFIEDNASKLTTTSTTA 54
ES+G SSK + E++ + TTTSTTA
Sbjct: 59 ESAGVSSSKKKRRIEEESPAATTTTSTTA 87
>08_01_0355 -
3122374-3122520,3122912-3123047,3123124-3123221,
3123724-3123801,3123876-3123945,3124452-3124516,
3124606-3124686,3124822-3124926,3125002-3125085,
3125175-3125250,3125358-3125436,3125526-3125646,
3125768-3125827
Length = 399
Score = 27.5 bits (58), Expect = 8.4
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +1
Query: 187 GKFKLTAGKFFSDPEDDKGLKTSEDARFYALSRKFKPF--SNEGKPLVVQFTVKHEQDI 357
G+ + A DPE D+ LK EDA AL++K + N K ++ ++++QD+
Sbjct: 244 GRVRDWARTHSGDPEIDEALKKGEDAGL-ALAKKVYAYIHKNGYKTKLMAAAIRNKQDV 301
>05_01_0360 +
2814139-2814627,2815203-2815334,2815480-2815583,
2816180-2816292,2818409-2818506,2818636-2818815,
2818893-2819114,2819270-2819404,2819489-2819771,
2819858-2819931,2820164-2820384,2820463-2820550,
2820651-2820744,2820827-2821015,2821369-2821400,
2821542-2821621,2821718-2821807,2821911-2821980,
2822240-2822285,2822370-2822428,2822588-2822753,
2822929-2823107,2823186-2823392,2823529-2823633,
2823701-2823703
Length = 1152
Score = 27.5 bits (58), Expect = 8.4
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = -3
Query: 426 GLSVHVLLLQFAVKDLKVSASTVNVLFMFDSELDDQGFTLITERFELTGESIEPRIFR 253
G V LL L ++ +T +V+ ++DS+ + Q +R G+ E ++FR
Sbjct: 652 GSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFR 709
>03_02_0389 -
8036575-8036841,8037011-8037133,8037516-8037736,
8037788-8037812,8038344-8038445,8038556-8038951,
8039647-8039699,8039813-8039897,8040220-8040370,
8040457-8040464
Length = 476
Score = 27.5 bits (58), Expect = 8.4
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +1
Query: 199 LTAGKFFSDPEDDKGLKTSEDARFYALSRKFK-PFSNEGKPLVVQFTV 339
L AG + + GL S ARFYA+ R + S++ VQF+V
Sbjct: 12 LVAGGYLVLERPNAGLVLSTSARFYAIVRPLRDELSHDSWAWAVQFSV 59
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,071,156
Number of Sequences: 37544
Number of extensions: 376709
Number of successful extensions: 1065
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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