Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27f09
(587 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X59589-1|CAA42159.1| 395|Caenorhabditis elegans calreticulin pr... 190 8e-49
AF125963-7|AAD14746.1| 395|Caenorhabditis elegans Calreticulin ... 190 8e-49
Z22181-5|CAA80183.1| 619|Caenorhabditis elegans Hypothetical pr... 76 2e-14
Z66494-5|CAA91259.1| 473|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z82055-1|CAB04843.1| 405|Caenorhabditis elegans Hypothetical pr... 28 4.3
Z29094-14|CAJ43434.1| 893|Caenorhabditis elegans Hypothetical p... 28 4.3
Z29094-10|CAD45580.2| 965|Caenorhabditis elegans Hypothetical p... 28 4.3
Z29094-9|CAA82347.3| 960|Caenorhabditis elegans Hypothetical pr... 28 4.3
AY450852-1|AAR18092.1| 960|Caenorhabditis elegans Tousled-like ... 28 4.3
AY349016-1|AAQ55496.1| 394|Caenorhabditis elegans NHR-41 protein. 27 7.5
AY349015-1|AAQ55495.1| 459|Caenorhabditis elegans NHR-41B protein. 27 7.5
AY349014-1|AAQ55494.1| 583|Caenorhabditis elegans NHR-41A protein. 27 7.5
Z81526-1|CAB04264.1| 816|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z66561-2|CAA91460.1| 331|Caenorhabditis elegans Hypothetical pr... 27 9.9
U97009-3|AAC69031.1| 619|Caenorhabditis elegans Hypothetical pr... 27 9.9
U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical pr... 27 9.9
U40802-4|AAK19010.1| 80|Caenorhabditis elegans Hypothetical pr... 27 9.9
>X59589-1|CAA42159.1| 395|Caenorhabditis elegans calreticulin
protein.
Length = 395
Score = 190 bits (462), Expect = 8e-49
Identities = 85/144 (59%), Positives = 111/144 (77%), Gaps = 1/144 (0%)
Frame = +1
Query: 97 INCDVFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYA 276
++ +V+F+E+F D SWE WV S+H +FG FKL+AGKFF D+G++TS+DA+FY+
Sbjct: 13 VSAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAKFYS 71
Query: 277 LSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPD 453
+ KF K FSN+GK LV+Q+TVKHEQ IDCGGGY+KV + D HGETPY +MFGPD
Sbjct: 72 RAAKFDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFGPD 131
Query: 454 ICGPGTKKVHVIFSYKGKNHLIKK 525
ICGP T++VHVI +YKG+N LIKK
Sbjct: 132 ICGP-TRRVHVILNYKGENKLIKK 154
Score = 34.3 bits (75), Expect = 0.065
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +2
Query: 521 KKDIRCKDDVYTHLYTLIVKPD 586
KK+I CK D THLYTLI+ D
Sbjct: 153 KKEITCKSDELTHLYTLILNSD 174
>AF125963-7|AAD14746.1| 395|Caenorhabditis elegans Calreticulin
protein 1 protein.
Length = 395
Score = 190 bits (462), Expect = 8e-49
Identities = 85/144 (59%), Positives = 111/144 (77%), Gaps = 1/144 (0%)
Frame = +1
Query: 97 INCDVFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYA 276
++ +V+F+E+F D SWE WV S+H +FG FKL+AGKFF D+G++TS+DA+FY+
Sbjct: 13 VSAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAKFYS 71
Query: 277 LSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPD 453
+ KF K FSN+GK LV+Q+TVKHEQ IDCGGGY+KV + D HGETPY +MFGPD
Sbjct: 72 RAAKFDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFGPD 131
Query: 454 ICGPGTKKVHVIFSYKGKNHLIKK 525
ICGP T++VHVI +YKG+N LIKK
Sbjct: 132 ICGP-TRRVHVILNYKGENKLIKK 154
Score = 34.3 bits (75), Expect = 0.065
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +2
Query: 521 KKDIRCKDDVYTHLYTLIVKPD 586
KK+I CK D THLYTLI+ D
Sbjct: 153 KKEITCKSDELTHLYTLILNSD 174
>Z22181-5|CAA80183.1| 619|Caenorhabditis elegans Hypothetical
protein ZK632.6 protein.
Length = 619
Score = 76.2 bits (179), Expect = 2e-14
Identities = 40/94 (42%), Positives = 55/94 (58%), Gaps = 3/94 (3%)
Frame = +1
Query: 229 EDDKGLKTSEDARFYALSRKFK-PFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFD--CKL 399
E D GL AR +A++ K PF+ + VVQ+ +K E+ +CGGGYLK+ +
Sbjct: 107 EGDLGLIVKTKARHHAIAAKLNTPFAFDANTFVVQYDIKFEEGQECGGGYLKLLSEGAEK 166
Query: 400 EQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYK 501
+ + +T Y IMFGPD CG T KVH+IF YK
Sbjct: 167 DLANFQDKTAYTIMFGPDKCG-ATGKVHLIFRYK 199
>Z66494-5|CAA91259.1| 473|Caenorhabditis elegans Hypothetical
protein C34C6.5a protein.
Length = 473
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +2
Query: 320 WSSSSLSNMNKTLTVEADTLRSLTANWSRRTCTERPHM 433
W SS L+ + T+ + T+RS+ + S+ TCTE HM
Sbjct: 15 WYSSLLTIFSLTIKRKLKTIRSMQDSTSKCTCTEH-HM 51
>Z82055-1|CAB04843.1| 405|Caenorhabditis elegans Hypothetical
protein T26H2.1 protein.
Length = 405
Score = 28.3 bits (60), Expect = 4.3
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 412 MHGETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKRYPLQR 543
++G EI D+C +K+H S KG + L KRY ++R
Sbjct: 324 VNGIKHLEISKTLDLCFQLPRKLHSFISLKGSSSLHHKRYNIRR 367
>Z29094-14|CAJ43434.1| 893|Caenorhabditis elegans Hypothetical
protein C07A9.3c protein.
Length = 893
Score = 28.3 bits (60), Expect = 4.3
Identities = 20/75 (26%), Positives = 28/75 (37%)
Frame = -1
Query: 233 SSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNASKLTTTSTTA 54
+ GS K PAV N NS+ Q+ HE ++ T +N T T
Sbjct: 254 NQGSPKRQPAVQQNGSNSYDSQQQQPQMNQHEMQNSYWGVATPSLGVNNRGTPTPTQQQH 313
Query: 53 FIFDSQYHLLQQKTG 9
+ DS + Q G
Sbjct: 314 YSSDSNSNSNQSPPG 328
>Z29094-10|CAD45580.2| 965|Caenorhabditis elegans Hypothetical
protein C07A9.3b protein.
Length = 965
Score = 28.3 bits (60), Expect = 4.3
Identities = 20/75 (26%), Positives = 28/75 (37%)
Frame = -1
Query: 233 SSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNASKLTTTSTTA 54
+ GS K PAV N NS+ Q+ HE ++ T +N T T
Sbjct: 321 NQGSPKRQPAVQQNGSNSYDSQQQQPQMNQHEMQNSYWGVATPSLGVNNRGTPTPTQQQH 380
Query: 53 FIFDSQYHLLQQKTG 9
+ DS + Q G
Sbjct: 381 YSSDSNSNSNQSPPG 395
>Z29094-9|CAA82347.3| 960|Caenorhabditis elegans Hypothetical
protein C07A9.3a protein.
Length = 960
Score = 28.3 bits (60), Expect = 4.3
Identities = 20/75 (26%), Positives = 28/75 (37%)
Frame = -1
Query: 233 SSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNASKLTTTSTTA 54
+ GS K PAV N NS+ Q+ HE ++ T +N T T
Sbjct: 321 NQGSPKRQPAVQQNGSNSYDSQQQQPQMNQHEMQNSYWGVATPSLGVNNRGTPTPTQQQH 380
Query: 53 FIFDSQYHLLQQKTG 9
+ DS + Q G
Sbjct: 381 YSSDSNSNSNQSPPG 395
>AY450852-1|AAR18092.1| 960|Caenorhabditis elegans Tousled-like
kinase protein.
Length = 960
Score = 28.3 bits (60), Expect = 4.3
Identities = 20/75 (26%), Positives = 28/75 (37%)
Frame = -1
Query: 233 SSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNASKLTTTSTTA 54
+ GS K PAV N NS+ Q+ HE ++ T +N T T
Sbjct: 321 NQGSPKRQPAVQQNGSNSYDSQQQQPQMNQHEMQNSYWGVATPSLGVNNRGTPTPTQQQH 380
Query: 53 FIFDSQYHLLQQKTG 9
+ DS + Q G
Sbjct: 381 YSSDSNSNSNQSPPG 395
>AY349016-1|AAQ55496.1| 394|Caenorhabditis elegans NHR-41 protein.
Length = 394
Score = 27.5 bits (58), Expect = 7.5
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Frame = -1
Query: 335 VNWTTKGLPSLLNGLNLRERA*NLASSEVFKPLSSSGSLKNFPA-VNLNFPNSFPGCSLY 159
+++T + LPS + R +AS E+F+ +SSS S +N + ++N +S +
Sbjct: 245 ISFTAQDLPSSMASPETRS-VNQMASQELFEYVSSSKSTQNHMSNEHINVDDSTSEDN-D 302
Query: 158 TQLLSHESSGNFSSKNTSQFIE 93
T + S +SS N +++ S+ ++
Sbjct: 303 THVTSQQSSVNIAAERFSRILQ 324
>AY349015-1|AAQ55495.1| 459|Caenorhabditis elegans NHR-41B protein.
Length = 459
Score = 27.5 bits (58), Expect = 7.5
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Frame = -1
Query: 335 VNWTTKGLPSLLNGLNLRERA*NLASSEVFKPLSSSGSLKNFPA-VNLNFPNSFPGCSLY 159
+++T + LPS + R +AS E+F+ +SSS S +N + ++N +S +
Sbjct: 342 ISFTAQDLPSSMASPETRS-VNQMASQELFEYVSSSKSTQNHMSNEHINVDDSTSEDN-D 399
Query: 158 TQLLSHESSGNFSSKNTSQFIE 93
T + S +SS N +++ S+ ++
Sbjct: 400 THVTSQQSSVNIAAERFSRILQ 421
>AY349014-1|AAQ55494.1| 583|Caenorhabditis elegans NHR-41A protein.
Length = 583
Score = 27.5 bits (58), Expect = 7.5
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Frame = -1
Query: 335 VNWTTKGLPSLLNGLNLRERA*NLASSEVFKPLSSSGSLKNFPA-VNLNFPNSFPGCSLY 159
+++T + LPS + R +AS E+F+ +SSS S +N + ++N +S +
Sbjct: 466 ISFTAQDLPSSMASPETRS-VNQMASQELFEYVSSSKSTQNHMSNEHINVDDSTSEDN-D 523
Query: 158 TQLLSHESSGNFSSKNTSQFIE 93
T + S +SS N +++ S+ ++
Sbjct: 524 THVTSQQSSVNIAAERFSRILQ 545
>Z81526-1|CAB04264.1| 816|Caenorhabditis elegans Hypothetical
protein F33H2.2 protein.
Length = 816
Score = 27.1 bits (57), Expect = 9.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -1
Query: 143 HESSGNFSSKNTSQFIEDNASKLTTTSTTAFIFDS 39
+ S +F S +TSQ D + T + AFIFDS
Sbjct: 376 NNSVESFQSLSTSQTASDLSGSSGTVNRAAFIFDS 410
>Z66561-2|CAA91460.1| 331|Caenorhabditis elegans Hypothetical
protein F08G12.2 protein.
Length = 331
Score = 27.1 bits (57), Expect = 9.9
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -3
Query: 384 DLKVSASTVNVLFMFDSELDDQGFTLITERFELTGESIEP 265
D +S NVL ++D D+ +TL R +TG S+ P
Sbjct: 178 DQVISGGIDNVLKVWDMRRDEITYTLTGHRDTITGISLSP 217
>U97009-3|AAC69031.1| 619|Caenorhabditis elegans Hypothetical
protein T19H12.6 protein.
Length = 619
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 367 GGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGT 471
GGY+ D + + DM EI +CGPG+
Sbjct: 415 GGYMTASDLEDYESDMSSAICSEIDVDTKVCGPGS 449
>U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical
protein T23H2.3 protein.
Length = 1009
Score = 27.1 bits (57), Expect = 9.9
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = -3
Query: 405 LLQFAVKDLKVSASTVNVLFMFDSELDDQGFTLITERFELTGESIEPRIFRG 250
L + ++K+L+ + L F S L D G + + E+T E IE RI G
Sbjct: 233 LQKLSIKELEANKDKKLKLLKFSSNLPDNGARVKLQVDEIT-EEIERRIING 283
>U40802-4|AAK19010.1| 80|Caenorhabditis elegans Hypothetical
protein ZC477.4 protein.
Length = 80
Score = 27.1 bits (57), Expect = 9.9
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +2
Query: 251 PLKMRGSMLSPVSSNRSVMRVNPWSSSSLSNMNKTLTVEADTLRSLTANWSRRTCTERP 427
PLK+ S SS+ + ++ P S S +++++ L VE + A S CTE+P
Sbjct: 6 PLKILPGASSSSSSSTASSQIRPPSLSLSASLSEELRVEECGSPRVGAKESSFYCTEQP 64
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,696,194
Number of Sequences: 27780
Number of extensions: 332141
Number of successful extensions: 1089
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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