Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27f08
         (397 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    27   0.051
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   0.83 
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    23   0.83 
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    23   0.83 
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    23   1.5  
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          22   1.9  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    22   1.9  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           22   1.9  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       20   7.7  

>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 27.5 bits (58), Expect = 0.051
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +3

Query: 51  NTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNK 224
           +T  P  + PS+P   I + + T + +PG++  T  D  +D  R +ST       YN+
Sbjct: 58  STLDPGRKSPSSPR--ISSPSSTKSGSPGFLTYTKADRDVDLFRGSSTPESPEHYYNQ 113


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 23.4 bits (48), Expect = 0.83
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +3

Query: 135 GYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKE 233
           G +PP      + TS SNS +S  +     S E
Sbjct: 315 GLIPPEPISASLSTSNSNSPSSTNLIQNEASNE 347


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 23.4 bits (48), Expect = 0.83
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +3

Query: 135 GYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKE 233
           G +PP      + TS SNS +S  +     S E
Sbjct: 104 GLIPPEPISASLSTSNSNSPSSTNLIQNEASNE 136


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 23.4 bits (48), Expect = 0.83
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +3

Query: 135 GYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKE 233
           G +PP      + TS SNS +S  +     S E
Sbjct: 104 GLIPPEPISASLSTSNSNSPSSTNLIQNEASNE 136


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
 Frame = +3

Query: 36  GNFYYNTPPPPLRYPSNPAT-AIFTNAQTYN 125
           G FY    P P  YP  P T A+    Q YN
Sbjct: 197 GAFYQPLQPFPPPYPFYPGTSAMLAAYQRYN 227


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
 Frame = +3

Query: 45  YY--NTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNST 194
           YY  N   PP+ YP +       NA  Y ++   +P  T   +    R+  T
Sbjct: 35  YYENNQALPPITYPPSDWNCPQYNAPPYMSSVLQLPTVTEIQETQPQRTKPT 86


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +3

Query: 81  SNPATAIFTNAQTYNNAPGYVPPTTR--DNKMDTSRSNSTNSVAIAP 215
           S+P   +  +        G   P TR  D+K+  SR N+T S+ + P
Sbjct: 136 SHPFQRVLVHDILQPGVKGLHGPITRVIDSKVVDSRKNTTVSIDVFP 182


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
 Frame = +3

Query: 45  YY--NTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNST 194
           YY  N   PP+ YP +       NA  Y ++   +P  T   +    R+  T
Sbjct: 26  YYENNQALPPITYPPSDWNCPQYNAPPYMSSVLQLPTVTEIQETQPQRTKPT 77


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +3

Query: 144 PPTTRDNKMDTSRSNSTNSVAIAPYNKSKEPTL 242
           PP TR+   + +R N  +   +   N+  E T+
Sbjct: 367 PPLTREEIHEKARENLKHHANLRQKNQKGEVTV 399


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,558
Number of Sequences: 336
Number of extensions: 1774
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8435920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)