Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27f08
         (397 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    31   0.049
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    31   0.049
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    26   1.8  
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo...    25   3.2  
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    25   3.2  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    25   3.2  
SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   4.3  
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    25   5.6  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    25   5.6  
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb...    25   5.6  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    24   7.4  
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    24   7.4  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    24   7.4  
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip...    24   7.4  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    24   7.4  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    24   7.4  
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    24   9.8  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    24   9.8  

>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 31.5 bits (68), Expect = 0.049
 Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
 Frame = +3

Query: 9   QIKSMTDERGNFYYNTPPPPLRY--PSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSR 182
           QI     +RGN +  +PPPPL Y  P   AT    NA   NNA      TT  N  +   
Sbjct: 48  QIPLYWQQRGNEFQASPPPPLGYVTPEYGATGTPVNA---NNASRVDYATTAANVPEEYA 104

Query: 183 SNSTNSVAIAPYNKSKEPTLD 245
           ++ ++ +A   +N +  P +D
Sbjct: 105 NDYSSELAYI-HNVNDMPHVD 124


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 31.5 bits (68), Expect = 0.049
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
 Frame = +3

Query: 183 SNSTNSVAIAPYNKSKEPTLDAGESIWY------NKCVDFVQKIIRYYRCNDMSELSPLM 344
           +N    + I      K+  + AGE++ Y      N+C+ F+ +  R ++C D +E   L+
Sbjct: 476 NNDDPQIQIEILRSLKDTFIKAGENVKYLLPVVVNRCI-FLARNFRIFKCMDWAEKVRLL 534

Query: 345 IHFINT 362
             F+NT
Sbjct: 535 WEFVNT 540


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 63  PPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVA 206
           PP+  P+  +    TN+   ++A G+ PP     K++  RS+S N  A
Sbjct: 536 PPIVKPNLMSEPTPTNSDEKSHALGFPPPP--GQKIEFQRSSSKNGTA 581


>SPAC20G8.10c ||SPAC3A12.01c|beclin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 464

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 3   RVQIKSMTDERGNFYY-NTPPPPLRYPS 83
           R+Q+   T   G++ + N PPP LR P+
Sbjct: 63  RLQLYKKTISEGDYNFDNVPPPELRTPT 90


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 149 YDARQQNGHEPQQQHKLGSDRTVQQEQR 232
           Y   QQN  E  Q HK   D+   QE++
Sbjct: 600 YLGNQQNAVEGDQDHKKKGDKETTQEEK 627


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 991

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +3

Query: 33   RGNFYYNTPPPPLRYPSNPATAIFTNAQTYNN 128
            RG  Y N PP    Y SN         ++YNN
Sbjct: 953  RGGGYSNGPPAGNHYSSNRGKGYGYQRESYNN 984


>SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 151

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +3

Query: 60  PPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNS 191
           PP    P++P +   +NA   N    Y+P   R     TS ++S
Sbjct: 54  PPVNTGPTSPVSINASNAAPSNLKASYIPANPRRLSSSTSSASS 97


>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
 Frame = +3

Query: 123 NNAPGYVPPTTRDNKMDTSRSNST--NSVAIAPYNKSKEPTLDAGESIWYNKCVDFVQKI 296
           +N P   PP    N  D S S +T  N    +   +S +   D   SI  N    F  K 
Sbjct: 524 HNGPSTQPPEALPNGTDPSSSKTTENNGNQQSERTESADGKKDNSGSISSNSSKTFTGKR 583

Query: 297 IRYYRCNDMSELSP 338
           +R     + + +SP
Sbjct: 584 VRLGNVIESNVVSP 597


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +3

Query: 138 YVPPTTRDNKMDTSRSNSTNS-VAIAPYNKSKEPTLDAGESIWYNKCVDFVQKIIRYYR 311
           Y  P  + ++  + R  +++  VAIA      EP L++G+  +Y +     QK    YR
Sbjct: 596 YEEPLNKLSRFSSDRLFTSHELVAIAELISLNEPPLESGKKFYYEEFQKACQKKRDDYR 654


>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 392

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 42  FYYNTPPPPLRYPSNPATAI 101
           F+Y   PPP  + S+P  AI
Sbjct: 98  FHYRLSPPPGEFKSSPRVAI 117


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 123 NNAPGYVPPTTRDNKMDTSRSNSTNSVA 206
           N+  GY    T+ +   TS  NST SV+
Sbjct: 120 NSVTGYASNYTQSSSNSTSTMNSTGSVS 147


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = +3

Query: 78  PSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKEPTLDAGES 257
           P+   T  + N    N  P Y   T  + +  TS   S++S    P  +  +PT  +GES
Sbjct: 199 PAEHMTGAYVNTPL-NQPPSYAASTQPEFQQTTSPIFSSSSTPPPPPPRPSQPT--SGES 255



 Score = 24.2 bits (50), Expect = 7.4
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
 Frame = +3

Query: 51  NTPPPPLRYPSNPAT--AIFTNAQTYNNAPGY---VPPTTRDNKMDTSRSNSTNSVA 206
           +TPPPP   PS P +  +  TN +   +A  +   V P    ++++TS  N  N+ A
Sbjct: 238 STPPPPPPRPSQPTSGESQNTNPRFPFSAQSFVFSVGPNGALHQVNTSTENPQNAQA 294


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
 Frame = -2

Query: 81   RDTSAAAEGCCNKNCH--VHLSY 19
            R  S   + CCNK+C   VH  Y
Sbjct: 1326 RQMSVYGKRCCNKSCRGSVHFEY 1348


>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
           antiporter Sod22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 128 RARVRAAYDARQQNGHEPQQQHK 196
           R+ +R +YD  Q+N HEP  + +
Sbjct: 609 RSFLRRSYDTFQRNLHEPDDERQ 631


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = +3

Query: 51  NTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPY 218
           N+P  P ++  NP+ A  TN     +A  +       +    S  NS N+V   P+
Sbjct: 139 NSPTVPSKFSLNPSVATSTNISPRRHAKSH-------SVASVSSPNSHNAVPFTPH 187


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 13/60 (21%), Positives = 29/60 (48%)
 Frame = +2

Query: 92  NGHIHQRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQRTDARRRRIYLVQQ 271
           +GHI ++   +   +   +Y + +   H+P++  +L   R VQ   R +  R++ Y   +
Sbjct: 41  SGHITEQPKYEHLEQYLDSYVSLEDGDHDPKEAKEL-VFREVQLRHRINEFRKKGYFTAE 99


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 17/67 (25%), Positives = 29/67 (43%)
 Frame = +3

Query: 54  TPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKE 233
           TP  P + P  PA    + A + N++   +PP       +T+  N    +A+  +     
Sbjct: 97  TPEEPRKLPGVPAPQKQSEASSVNSSTEKLPPPPSYPGPNTAHKNVERVLAMYDF----- 151

Query: 234 PTLDAGE 254
           P  DAG+
Sbjct: 152 PGPDAGD 158


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
 Frame = +3

Query: 51  NTPPPPLRYPSNPATAIFTNAQTY---NNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPY 218
           +TPPP   +PS   T+  T++      NN+      +T       + S S+ S + + Y
Sbjct: 690 STPPPTTSFPSTFTTSFITSSSLSSIPNNSTEVKTASTSSGTEIKTASTSSGSSSSSSY 748


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,418,759
Number of Sequences: 5004
Number of extensions: 25689
Number of successful extensions: 132
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)