Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27f08
         (397 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    29   0.019
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.18 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   0.55 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   0.73 
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   0.96 
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    23   1.7  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   3.9  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   6.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   6.8  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    20   9.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   9.0  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 29.1 bits (62), Expect = 0.019
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +3

Query: 120 YNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKEPTLDAGESIWYNKCVDFVQK 293
           Y + P Y+   T+D  ++ S    +N+V  A   K+ E   D  +   Y++   +VQK
Sbjct: 454 YKSYPNYIDKETKDMNLEISTRPKSNTVENACVLKNTEIFKDKSDWFDYSEVSKWVQK 511


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.8 bits (54), Expect = 0.18
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 119  LQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQRTDARRR 250
            LQ++ R  A    +QQ   + QQQ +    +  QQ+Q+  AR R
Sbjct: 1198 LQEQQRNAAMVQQQQQQQQQQQQQQQ--QQQQQQQQQQHQARER 1239



 Score = 25.0 bits (52), Expect = 0.31
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +2

Query: 98   HIHQRANLQQRARVRAAYDARQ--QNGHEPQQQHKLGSDRTVQQEQRTDARRRRIY 259
            H  Q+   QQ  + +     +Q  Q   +PQQQ      +  QQ+Q+   ++++ Y
Sbjct: 1495 HSSQKTQQQQPQQQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQPQQQQKEY 1550



 Score = 24.2 bits (50), Expect = 0.55
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 98  HIHQRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQR 232
           H HQ  + Q +A+ +     +QQ    PQQQ +    +  QQ+QR
Sbjct: 815 HHHQSTHPQAQAQAQPQQQQQQQQQQ-PQQQQQ--QQQQQQQQQR 856



 Score = 23.8 bits (49), Expect = 0.73
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +2

Query: 104 HQRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQR 232
           HQ+ +  Q    +A   A+ Q   + QQQ      +  QQ+Q+
Sbjct: 811 HQQLHHHQSTHPQAQAQAQPQQQQQQQQQQPQQQQQQQQQQQQ 853


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.2 bits (50), Expect = 0.55
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +2

Query: 107 QRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQR 232
           Q+ + QQ+ + +   +A+Q    + QQQ +    +  QQ+Q+
Sbjct: 421 QQQHQQQQQQTQHVINAQQPQQQQQQQQQQQQQQQQQQQQQQ 462



 Score = 22.6 bits (46), Expect = 1.7
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +2

Query: 107 QRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQR 232
           Q+   QQ+ + +        N  +PQQQ +    +  QQ+Q+
Sbjct: 416 QQMQAQQQHQQQQQQTQHVINAQQPQQQQQQQQQQQQQQQQQ 457



 Score = 22.2 bits (45), Expect = 2.2
 Identities = 12/50 (24%), Positives = 28/50 (56%)
 Frame = +2

Query: 122 QQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQRTDARRRRIYLVQQ 271
           +Q+ +++A    +QQ   + Q QH + + +  QQ+Q+   ++++    QQ
Sbjct: 413 EQQQQMQAQQQHQQQ---QQQTQHVINAQQPQQQQQQQQQQQQQQQQQQQ 459



 Score = 20.2 bits (40), Expect = 9.0
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +2

Query: 104 HQRANLQQRARVRAAYDARQQNGHEPQQQHK 196
           HQ+   Q +  + A    +QQ   + QQQ +
Sbjct: 424 HQQQQQQTQHVINAQQPQQQQQQQQQQQQQQ 454


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 0.73
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 129 APGYVPPTTRDNKMD 173
           +PGYV P T+  K+D
Sbjct: 113 SPGYVQPPTKHQKLD 127


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 0.96
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 276 HICCTK*IRRRRASVLCSCCTVR 208
           + C ++  RR    +LC+CC  R
Sbjct: 390 YACWSRDFRRAFVRILCACCPGR 412


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +2

Query: 119 LQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQR 232
           +++R R +  +  R  +  + QQQ +   D+  QQ+ R
Sbjct: 72  MREREREQREHSDRVTSQQQQQQQQQQQQDQQQQQQSR 109


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 152 DARQQNGHEPQQQHKL 199
           DAR++ G  P+QQ +L
Sbjct: 171 DARKKKGPTPRQQEEL 186


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 13/61 (21%), Positives = 25/61 (40%)
 Frame = +2

Query: 50  QHPSAAAEVSL*SGNGHIHQRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQ 229
           QH S A +  L +   H+  +   Q +A  + +         +  QQH+      + Q+Q
Sbjct: 185 QHQSQAQQQHLQAHEQHMMYQQQQQSQAASQQSQPGMHPRQQQQAQQHQGVVTSPLSQQQ 244

Query: 230 R 232
           +
Sbjct: 245 Q 245


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 54  TPPPPLRYPSNPA 92
           TPPPPL +  N A
Sbjct: 337 TPPPPLVWRRNGA 349


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -1

Query: 337 GLSSDMSLHL*YLIIF*TKSTHLLYQIDSP 248
           G+S + S+    +++F  K++ LL Q+  P
Sbjct: 142 GISGETSVCPSQIVVFDLKNSKLLKQVKIP 171


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +3

Query: 36   GNFYYNTPPPPLRYPSNPATAIFTNAQT 119
            GN +  T  PP+ +P+N +    + +Q+
Sbjct: 1752 GNGHSGTMGPPVGHPTNASAHSRSGSQS 1779


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,101
Number of Sequences: 438
Number of extensions: 1873
Number of successful extensions: 22
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)