Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27f05
         (429 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    29   0.40 
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    26   2.2  
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    25   3.8  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    25   3.8  
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p...    25   5.0  
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch...    25   6.6  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    24   8.7  

>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 28.7 bits (61), Expect = 0.40
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +3

Query: 84  WNLYVQLKEMRRNIYIKRRAEAEKASYDHYCDIDYCLEEERESNSKLLEVV 236
           W     LK +R    +K+R     A Y   C++  CL+EE   N  LLE V
Sbjct: 541 WKPMPDLKVVRSRPSLKQRP-LRSAEYVRVCELK-CLQEEEFDNKVLLEQV 589


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 9/41 (21%), Positives = 23/41 (56%)
 Frame = +3

Query: 69  LAVQCWNLYVQLKEMRRNIYIKRRAEAEKASYDHYCDIDYC 191
           + +Q  N ++QL+  + N Y+++R+      +  + D ++C
Sbjct: 139 MRIQLANRHIQLRAPKYNSYLRQRSRLAYQVHSFFNDREFC 179


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 126 YIKRRAEAEKASYDHYCDIDYCLEEERESNSKLLEVVSEGRNSS 257
           Y++   E E    ++  ++ + LE+E ESNS   +VV   R  S
Sbjct: 665 YLEDMDEGEMLDANNLPEMQFALEQELESNSSDDDVVEVHRELS 708


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 165 DHYCDIDYCLEEERESNSKLLEVVSEGRNSSSVAA 269
           +H   +D CL+E   +NS+LL+V S+  N+ ++ A
Sbjct: 680 EHIDFLDTCLKECMLTNSRLLKVQSKLLNTCAMFA 714


>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 591

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +3

Query: 33  NYSVIIMGVLTILAVQC 83
           NY+V+IMG ++I A+ C
Sbjct: 544 NYAVVIMGGVSIFAIIC 560


>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 161

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 192 LEEERESNSKLLEVVSEGRNSSSVAA 269
           LEEE E+N KLL   +E    + V A
Sbjct: 91  LEEELETNDKLLRETTEKMRQTDVKA 116


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 101 LHVQIPALHS*YRKHAHYDYGIVLIKH 21
           L+ Q+P  HS + K + ++ G  ++KH
Sbjct: 529 LNNQLPTKHSQFYKKSRFNDGSFMVKH 555


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,341,974
Number of Sequences: 5004
Number of extensions: 20220
Number of successful extensions: 67
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)