Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27f05
         (429 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0422 + 5573833-5574647,5575577-5575692,5576922-5577130,557...    29   2.1  
07_03_0931 - 22720388-22720393,22720586-22720649,22720770-22721356     27   6.4  
07_01_0235 - 1719447-1721491,1721986-1722097                           27   8.5  
01_06_0371 + 28819035-28819322,28820541-28820595,28821179-288213...    27   8.5  

>04_01_0422 + 5573833-5574647,5575577-5575692,5576922-5577130,
            5579676-5579795,5581616-5581744,5581828-5581953,
            5582945-5583000,5583084-5583183,5585155-5585272,
            5585374-5585583,5585902-5586226,5587094-5587187,
            5588021-5588129,5588246-5588514,5589153-5589280,
            5589983-5590217,5590858-5591046,5591326-5591609,
            5591698-5591890,5592040-5592207,5592429-5592514,
            5594391-5594550
          Length = 1412

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 48   IMGVLTILAVQC-WNLYVQLKEMRRNIYIKRRAEAEKASYDHYC 176
            I  +L++LA  C W+     K+ RR   I R  E  K+ YDH C
Sbjct: 1000 IHSILSVLAYPCAWSW----KQWRRRKKIHRLQEYVKSEYDHSC 1039


>07_03_0931 - 22720388-22720393,22720586-22720649,22720770-22721356
          Length = 218

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
 Frame = +3

Query: 168 HYCDIDYCLEEER---ESNSKLLEV 233
           HYCD +YCL E     ES  K++ V
Sbjct: 123 HYCDSEYCLRELALLVESRKKIIPV 147


>07_01_0235 - 1719447-1721491,1721986-1722097
          Length = 718

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 133 KGAPKPKKHLMII-IATLTIASKKNEKVTLNCWKWFPKAEIAAAW 264
           KG+ + K  L+I+ IAT T A   +  V L   +WF  AE+   W
Sbjct: 338 KGSRRSKVLLIIVPIATATSAVAVSLAVFLFVRRWFKYAELREDW 382


>01_06_0371 +
           28819035-28819322,28820541-28820595,28821179-28821354,
           28821481-28821702,28821796-28822034,28822107-28822632,
           28822726-28822999,28823098-28823737,28823833-28824061,
           28824299-28824565,28824700-28824963,28825045-28825689
          Length = 1274

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 21  VFNQNYSVIIMGVLTILAVQCWNLYVQLKEMR-RNIYIKRRAEAEKASYD 167
           V N  Y  I   V++ L V CW +  + +  R R++Y+K     + A +D
Sbjct: 98  VLNFVYLGIATAVVSFLQVACWTMTGERQATRIRSLYLKSVLRQDIAFFD 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,816,665
Number of Sequences: 37544
Number of extensions: 136541
Number of successful extensions: 345
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)